Transcript Information: R_Transcript_53122.p1


Annotated TAIR IDAT1G79090.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29749551-29752945 | Reverse length=793
E-Value1.5E-276
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.457587746058
Replicate 28.922765750684
Replicate 311.698901294378
Condition 2: 8 Hour
Replicate 18.059029951111
Replicate 210.038428670192
Replicate 314.512132576703
Condition 3: 24 Hour
Replicate 114.938497515126
Replicate 212.042783227768
Replicate 314.904616054129


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53122.p1 GENE.R_Transcript_53122~~R_Transcript_53122.p1 ORF type:complete len:793 (+),score=209.76 R_Transcript_53122:478-2856(+)
ATGGATGGATTTGAAGACCCAAAGAAATTGGGTGACAATTCAAAAGATGGTGCCGTATTTGATGCATCTCAATATGCATTCTTTGGTAATGATGCTCTTGAAGAAGTTGAGTTGGGGGGACTTGGGGATGAGGAGGATGATATCCCAGCGATTGCAGTTGATGATGATTTACAATTTGACCAAGAAGAGGGTGATGGTCTGGGATCTTTTTCCGACGTGGATGATCTTACCAGTACTTTTTCAAAGTTGAATAAGGTGGTCAGTGAAACAGGAATTGCAGGCTTTATTGGTGATAGAGGGTCAAGACAAAGTTCAGCTGCTGCCGAATGGGTACAGGATGTTGATTACTCTAATTGGTATGATCAACAAGCATATCATCCTGAAGATGTGAATGATGGCAAAAGGTGGTCTTCCCAGCCATATTCTGCTTCTGCTCGCCTTTCCGAGTCAAAGCCATTGCATAGGACATCATCATATCCTGATCCCCCACCTCAGTTCTTGCCTCAACAGCATCCCAATTTCTCTAGTGAACCGATTCATGTCCCTAGGTCTTCCTTTCCTTCCTATCCTCCGCCTGGCAGTATGCCACATATGGTTTCACCAAATCACCATGCACAACATCCAAACAATCCATATCTTCCTGCAGGCCAACAGATGGCATTACATTCGCAAACATCCTTTTCAAGTCCTTTATCTGGCATACCCCATGGCCCTAATTTCCCTACAAATATGCCTCCATTTTCCCCACCCAATCAGTCAGGTGATAATCGCCCACCTACACAATGGTTAAATTGTGCAAACCGTCTGATCAATATGTTGCCCCAGCAATTAACTCATCAAAATGGAATGATGCCACCACAGTTGATGGCTCAGCAGCATCAACAGCAGCAACAGCAGCAGTATAGACTGCACCATCAAGCTCCTCCACCTTATGGTCATTTAACTGGGGTGCATTCTCAGTATGGTCAGAACATGTCTCCATCACCACCCATGTTAAACAAGTTTGATGCTATGATGGGGATTTCTGATATCAGAGACCAGAGACCTAGGTCATCGCAGAAGAATAGACCGAATATGCGTTACCCCCAGCAGGGATTTGACACTAATAGTCAGAGGGGTGATGGTGCATGGCCTCTGTTCAGGTCAAAGTATATGACAGCTGATGAAATTGAGAATATTCTGAGGATGCAGTTGGCTGCCACACATAGCAATGATCCTTATGTAGATGATTATTACCACCAAGCTTGTCTTGCTAAAAAATCTGTTGGGGCAAGGTTGAAGCATCATTTTTGTCCTAATCTGATCCGAGATCTTCCTCCACGGGCTCGCCCTACTGATGAGCCCCATCCTTTCCTCCAAGTTGAGGCTTTGGGAAGAATTCCCTTTTCTTCTATCCGCAGGCCAAAACCACTTCTTGAAGTGGATCCCCCAAATACCACTAGTTCTGGAAGCAATGAACAGAAAATCATTGATAAACCCCTTGAGCAGGAACCTATGCTGGCTGCAAGAGTGACTATTGAGGATTGTCTCTGTCTTCTTCTTGATGTAGATGATATAGATCGTTTCCTTCAATTTAATCAATTCCCAGATGGTGGTGCTGAATTGAGACAGCGACGACAAAGCCAGCTGGAAGGATTGGCAGCTTCCCTTCAGCTGGTAGATCCACTTGGTAAAGGTGGACAAACTCCTAAGGATGATTTTGTTTTCATACGAATAATTTCTCTTCCAAAGGGACGGAAGCTTCTAGGGAAGTACCTTGAGGTGCTTCTTCCTGGCACAGAGCTCCATCGAGTTGTCTGCATGGCCATTTTTCGTCATTTGAGATTCCTGTTTGGTGTGCTTCCATCTGATCCAGCAGTTGCTGAGGTGACTGTTAACCTTGCAAAGATTGTATCATCATGTGTTGTTGGGATGGATCTCAATGGATTAAGTGCTTGCCTTGCTGCGGTAGTTTGTTCGTCAGAGCCACCTCCACTTCGGCCGATTGGGAGCTCTGCTGGAGATGGTGCTTCTGTTGTCCTAAAGTCAGTTCTGGATAGAGCAACTGAGCTTCTTAGGGACCCTCATGTGACTGGCACATATAATGTGTCAAATCCAGCCTTCTGGCAGGCATCATTTGATGAATTTTTCAATTTGCTTCTAAAATACTGTTTTAACAAGTATGACAGCATCGTTCAGCCGCTGCACATGCAAGCTTCATCAAATATGGCTGCTATTGGATCTGATGTGGCTAGAGCTATTAAGAGGGAAATGCCTGTCGAACTGTTGCGAGCAAGCCTTCCTCATACTAATGATCACCAGCGAAAGCTCTTAATGGAGCTTGCACAACGCTCTGTGCCTGTAGTGGGCTCTGGTGGAAATGGTAGTCTTGATGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53122.p1 GENE.R_Transcript_53122~~R_Transcript_53122.p1 ORF type:complete len:793 (+),score=209.76 R_Transcript_53122:478-2856(+)
MDGFEDPKKLGDNSKDGAVFDASQYAFFGNDALEEVELGGLGDEEDDIPAIAVDDDLQFDQEEGDGLGSFSDVDDLTSTFSKLNKVVSETGIAGFIGDRGSRQSSAAAEWVQDVDYSNWYDQQAYHPEDVNDGKRWSSQPYSASARLSESKPLHRTSSYPDPPPQFLPQQHPNFSSEPIHVPRSSFPSYPPPGSMPHMVSPNHHAQHPNNPYLPAGQQMALHSQTSFSSPLSGIPHGPNFPTNMPPFSPPNQSGDNRPPTQWLNCANRLINMLPQQLTHQNGMMPPQLMAQQHQQQQQQQYRLHHQAPPPYGHLTGVHSQYGQNMSPSPPMLNKFDAMMGISDIRDQRPRSSQKNRPNMRYPQQGFDTNSQRGDGAWPLFRSKYMTADEIENILRMQLAATHSNDPYVDDYYHQACLAKKSVGARLKHHFCPNLIRDLPPRARPTDEPHPFLQVEALGRIPFSSIRRPKPLLEVDPPNTTSSGSNEQKIIDKPLEQEPMLAARVTIEDCLCLLLDVDDIDRFLQFNQFPDGGAELRQRRQSQLEGLAASLQLVDPLGKGGQTPKDDFVFIRIISLPKGRKLLGKYLEVLLPGTELHRVVCMAIFRHLRFLFGVLPSDPAVAEVTVNLAKIVSSCVVGMDLNGLSACLAAVVCSSEPPPLRPIGSSAGDGASVVLKSVLDRATELLRDPHVTGTYNVSNPAFWQASFDEFFNLLLKYCFNKYDSIVQPLHMQASSNMAAIGSDVARAIKREMPVELLRASLPHTNDHQRKLLMELAQRSVPVVGSGGNGSLDG*

Click here to download the sequence:
Link to NCBI Protein BLAST