Transcript Information: R_Transcript_5314.p1


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value5E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.026379050312
Replicate 218.99311981121
Replicate 322.825795060477
Condition 2: 8 Hour
Replicate 118.948425524547
Replicate 226.074526528591
Replicate 322.641408300341
Condition 3: 24 Hour
Replicate 122.633315252754
Replicate 221.509722451588
Replicate 320.186187008057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5314.p1 GENE.R_Transcript_5314~~R_Transcript_5314.p1 ORF type:5prime_partial len:283 (+),score=61.26,Vma12|PF11712.4|1.1e-08 R_Transcript_5314:1-849(+)
GTCCATTTGACTCCCCAAACGGCCAAACCCAATTCTCTCTCTCTCTCTCTCTCCCTCTCTCTGAGCAACTGCAGAAGGAAAGAATGTGAGGTTTCGAAAGAAGTGTCTGTGTCGTGTCGTTGGAGAAGAATTACTCCACAAGATGACTGCAAACGCAGAATCAGAAGCTCCAACATCTCCATCTTCATCTCCCTCAACAGCAAGTGGTTCAAGTGGTCTAATCTATCAAACACAGAACCCATCCGCTCTTTCTTAACTTCATCATCATCCCAAAATTCCGACCTTCCTGAACATCTCCGACAATCAGCAATTTCTCTCTCCTCGTCACCCTCAATCCCCTACAAGTCCCTCCGATCCATCTGGACTGCCTCAGATCCCGCCACGCGTCCTCCTCTCTCTCTCCTCCTCCACGGCTCTTCTTTCCTCTTCACCAGCCCTAAACCCAGAGAAAAGAGTGAAGAGCTGAAGGCGAGATTGAAGAAGCTGGAGGAACTAGCGGAGAAGAAGGCGTATGCTGAGCTTGTGAAAGATATAACTCCAAAGAAGGAGCCAGAGCCTTTCTCTTCTTACAAAGATCAGCTTGGATTTGGTTTACACGTTGCAGTCACTATGTTTACTGGCTACTTGGTTGGATACATTGCCTTTAGAGCATTGTTCAGCCGCAATCCTGCCATGAGTGCTGCTGGAGGCATTGTTGGTTTGGTTTGTGGCATGCTTGTAGAAACACTTCTGTTCATAATCAGAACTTCAGATGAAGAAGATAGAACATCTGCTTCTGGCTCAACTTCTAAATTGAGGATAAAAACTTCTTCCCCAACCTCTAACTTGAAGGTTAAGAAAAATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5314.p1 GENE.R_Transcript_5314~~R_Transcript_5314.p1 ORF type:5prime_partial len:283 (+),score=61.26,Vma12|PF11712.4|1.1e-08 R_Transcript_5314:1-849(+)
VHLTPQTAKPNSLSLSLSLSLSNCRRKECEVSKEVSVSCRWRRITPQDDCKRRIRSSNISIFISLNSKWFKWSNLSNTEPIRSFLTSSSSQNSDLPEHLRQSAISLSSSPSIPYKSLRSIWTASDPATRPPLSLLLHGSSFLFTSPKPREKSEELKARLKKLEELAEKKAYAELVKDITPKKEPEPFSSYKDQLGFGLHVAVTMFTGYLVGYIAFRALFSRNPAMSAAGGIVGLVCGMLVETLLFIIRTSDEEDRTSASGSTSKLRIKTSSPTSNLKVKKNQ*

Click here to download the sequence:
Link to NCBI Protein BLAST