Transcript Information: R_Transcript_5315.p1


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value1.5E-87
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.556873460683
Replicate 220.996300416298
Replicate 318.733052356175
Condition 2: 8 Hour
Replicate 117.119354730065
Replicate 218.381402869449
Replicate 316.151856907971
Condition 3: 24 Hour
Replicate 122.860528383519
Replicate 217.10217108888
Replicate 319.569091902268


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5315.p1 GENE.R_Transcript_5315~~R_Transcript_5315.p1 ORF type:complete len:236 (+),score=57.55,Vma12|PF11712.4|7e-09 R_Transcript_5315:143-850(+)
ATGACTGCAAACGCACAATCAGAAGCTCCAACACCTTCATCTTCATCTTCCTCAACAGGTAGTGGTTCAAGTGGTCTAATTCTATCAAACACAGAACCCATCCGCTCTTTCTTAACTTCATCATCATCCCAAAATTCCGACCTTCCTGAACATCTCCGACAATCAGCAATTTCTCTCTCCTCGTCACCCTCAATCCCCTACAAGTCCCTCCGATCCATCTGGACTGCCTCAGATCCCGCCACGCGTCCTCCTCTCTCTCTCCTCCTCCACGGCTCTTCTTTCCTCTTCACCAGCCCTAAACCCAGAGAAAAGAGTGAAGAGCTGAAGGCGAGATTGAAGAAGCTGGAGGAATTAGCGGAGAAGAAGGCATATGCTGAGCTTGTGAAAGATATAACTCCAAAGAAGGAGCCAGAGCCTTTCTCTTCTTACAAAGATCAGCTTGGATTTGGTTTACACGTTGCAGTCACTATGTTTACTGGCTACTTGGTTGGATACATTGCCTTTAGAGCATTGTTCAGCCGCAATCCTGCCATGAGTGCTGCTGGAGGCATTGTTGGTTTGGTTTGTGGCATGCTTGTAGAAACACTTCTGTTCATAATCAGAACTTCAGATGAAGAAGATAGAACATCTGCTTCTAGCTCAACTTCTAACTTGAAGATAAAAACTTCTTCCCCAACCACTAACTTGAAGGTTAAGAAAAATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5315.p1 GENE.R_Transcript_5315~~R_Transcript_5315.p1 ORF type:complete len:236 (+),score=57.55,Vma12|PF11712.4|7e-09 R_Transcript_5315:143-850(+)
MTANAQSEAPTPSSSSSSTGSGSSGLILSNTEPIRSFLTSSSSQNSDLPEHLRQSAISLSSSPSIPYKSLRSIWTASDPATRPPLSLLLHGSSFLFTSPKPREKSEELKARLKKLEELAEKKAYAELVKDITPKKEPEPFSSYKDQLGFGLHVAVTMFTGYLVGYIAFRALFSRNPAMSAAGGIVGLVCGMLVETLLFIIRTSDEEDRTSASSSTSNLKIKTSSPTTNLKVKKNQ*

Click here to download the sequence:
Link to NCBI Protein BLAST