Transcript Information: R_Transcript_53291.p1


Annotated TAIR IDAT4G28200.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:13987808-13990422 | Reverse length=648
E-Value8.2E-242
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.8392683860046
Replicate 27.3953278648523
Replicate 38.383936118653
Condition 2: 8 Hour
Replicate 111.249248827218
Replicate 29.9648033932389
Replicate 313.843035358274
Condition 3: 24 Hour
Replicate 114.238762522542
Replicate 210.470337298743
Replicate 314.379518086798


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53291.p1 GENE.R_Transcript_53291~~R_Transcript_53291.p1 ORF type:complete len:653 (+),score=145.94,U3_assoc_6|PF08640.7|8.5e-28,U3_assoc_6|PF08640.7|5.8e+03,U3_assoc_6|PF08640.7|1.1e+02,TPR_14|PF13428.2|77,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|1.6e+04 R_Transcript_53291:90-2048(+)
ATGGCGGACATAGTACGATACAGGCTAGAGAGAATGGTACCGGAGCTCGAAGACCTAGAACGAAGATCCCTATTCACCAAGAGAGAGATAAACGAGATTGTAAAAACTAGAACAAAATTCGAGTACCGATTGCAAAGACCAAGCCCATTAAAGCAAGATTTTTTGGATTACATTGAATATGAGAAGCAACTTGATAGACTCAGGCTTTTGAGAAGGAAAGCGGTTTCACGTGAGATTAAGGAAAAGGGGAATAAGAAGTTGAAGAAATCAGTATCGGATTTTGCTGGGGTTAGAAGGATTATTGAGATTTATAGAATGGCTACTAGTAGATTTAAGGGTGACCTTAAGCTTTGGTTTCAGTATTTGGAGTTTTGTAGGGAGAAGAAGAATGGCACCATGAAAAGGGCCTTGGCTCAGGTGATCAGGTTCCATCCAAAAAAGCCTGCAGTATGGGTGTATGCAGCTGCTTGGCAGTTTGACCATAACTTAGATGCTCAAGCTGCACGTGCTACCATGCTAAATGGTTTGAGAGCATGCCCACATTCAGAAGATCTATGGGTGGAGTATCTGCGCATGGAACTTACATACCTTAATAAATTAAAAATGCGTAAGGTCATGTTAGAGGAAGATGATGGTACTCTGATTCTTGATCATGAAGATGCTGAGGAGAAGCAGTGGCAAGATGAGAATAAAGAATTATTCATGTCCCTTGAAGAACATAAACAGGGTGGAAAGGGAGTGGAAGTTTCTAATGAAGATTCAAACAGGAAATTGGATATCTTTCGGGATCATGGCATTAGCATTCTGCGTACTGTGTACAAAAATGCAGTTGATGCTCTGCCATCTAATTTCAATCTTAGAAAGAGATTTCTTGAGATCGTTGAAGCTACTGATTTGGCACATTCAGAAGAAATCCAAAATGAGATTTTAGCTGACATGAAGAGAGATTTCTCCCAAGAACCTGAATATTGGGATTGGCTTGCTCGACTTAAAATGAATGATCCACAAAGTACTCCAGATATAGGTTCGGAAAGTGGAGGTCGTCAGGTGGATGAAGTTATTAAGGTATATGAGGAGGCTATACAACTTGCGCCATCCATTGTGATGTTTGACATGTACATCAAATTCTTAATGTCTTGCATTATTCCACAAGGAGAAGAAATGCAAGATTTTGGGCTTTCCAGTGCCTCAAATTCTGAAGCAAAATATGCTTCACAGCTATTGAAGATTTTTGAGAAAGCTGAAACCATGGGGTGTCTTAGTGAAGATCTTGCTTGCCAGCACATTAAATTTTACTTGCATACGGGGAAATTTGATGAAGCAATGAAGCTAGCAGAGAGATTTTGTGATGGTAGGTTTTCAGATTCAGTACTATTATGGGTACTGCGGGCCACAGAACATATGAAGATGATTAAAAAGTGTGCAAGTTCTCGTAAGGATCTATCATCTGTTATTGACCTCTTGAAAAAGATGGTGAAGAAAGCTGCTGTGTCTGGTGCTGAGAGTGTGTGGGTAATGGCCCTTGAGCTCTTTGCAGATGACAAAAAGTACTTCAAGAAGTTGCTGGATCTTTCCCTTGTTTCACTGGCAAAAGATGGTGGCACAGATAATGGGTTCTCTCTTCCAGCAACTCTTGTTAATTTTGTCCGTGAGAAGAATGGGATTCAGCAAGCAAGAGAATTGTACAAGCGTCTTATTAATTTACCTCACCCTGGGCTGGCCTTCTACAAACACTGCATTGAGTTAGAGATTTCAACCAATGACAAAAATAGTCTTGCGAACACACGGAAGTTATTTGAGTGCGCACTTACAACATATAGTGAAGACATCAGCTTGTGGCAGAAATATTATTCTATGGAGACAGAGATGGGAACTTCAGAAACAACAAACGCTGTATATTGGCGTGCAAAGAAAACACTTGGAGATGCCTCAGTGATTACTGCTCAATCCCTACAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53291.p1 GENE.R_Transcript_53291~~R_Transcript_53291.p1 ORF type:complete len:653 (+),score=145.94,U3_assoc_6|PF08640.7|8.5e-28,U3_assoc_6|PF08640.7|5.8e+03,U3_assoc_6|PF08640.7|1.1e+02,TPR_14|PF13428.2|77,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|1.6e+04 R_Transcript_53291:90-2048(+)
MADIVRYRLERMVPELEDLERRSLFTKREINEIVKTRTKFEYRLQRPSPLKQDFLDYIEYEKQLDRLRLLRRKAVSREIKEKGNKKLKKSVSDFAGVRRIIEIYRMATSRFKGDLKLWFQYLEFCREKKNGTMKRALAQVIRFHPKKPAVWVYAAAWQFDHNLDAQAARATMLNGLRACPHSEDLWVEYLRMELTYLNKLKMRKVMLEEDDGTLILDHEDAEEKQWQDENKELFMSLEEHKQGGKGVEVSNEDSNRKLDIFRDHGISILRTVYKNAVDALPSNFNLRKRFLEIVEATDLAHSEEIQNEILADMKRDFSQEPEYWDWLARLKMNDPQSTPDIGSESGGRQVDEVIKVYEEAIQLAPSIVMFDMYIKFLMSCIIPQGEEMQDFGLSSASNSEAKYASQLLKIFEKAETMGCLSEDLACQHIKFYLHTGKFDEAMKLAERFCDGRFSDSVLLWVLRATEHMKMIKKCASSRKDLSSVIDLLKKMVKKAAVSGAESVWVMALELFADDKKYFKKLLDLSLVSLAKDGGTDNGFSLPATLVNFVREKNGIQQARELYKRLINLPHPGLAFYKHCIELEISTNDKNSLANTRKLFECALTTYSEDISLWQKYYSMETEMGTSETTNAVYWRAKKTLGDASVITAQSLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST