Transcript Information: R_Transcript_53298.p1


Annotated TAIR IDAT5G15920.1
Annotated Gene Namestructural maintenance of chromosomes 5
Annotated Gene Symbol(s)SMC5
Annotation TypeOrtholog
Chromosome Positionchr5:5196210-5199559 | Forward length=1053
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.208567278278
Replicate 28.1031349515371
Replicate 39.6896371010341
Condition 2: 8 Hour
Replicate 18.4024688649767
Replicate 29.0548818102139
Replicate 311.439655742696
Condition 3: 24 Hour
Replicate 112.722815222197
Replicate 28.9311219461843
Replicate 312.275423731245


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53298.p1 GENE.R_Transcript_53298~~R_Transcript_53298.p1 ORF type:complete len:1052 (+),score=236.10,SMC_N|PF02463.15|6.9e-24,AAA_23|PF13476.2|5.3e-09,AAA_23|PF13476.2|1.6e+04,AAA_21|PF13304.2|1.1e-05,AAA_21|PF13304.2|6.1e+03,AAA_21|PF13304.2|2.8e+03,AAA_21|PF13304.2|9e+02,AAA_21|PF13304.2|8.7,AAA_29|PF13555.2|1.8e-05 R_Transcript_53298:189-3344(+)
ATGTCTGAACGGCGTTCAAAACGTCCCAAACTTAACAGAGGGGAAGATGGTTATTTGCCTGGAAACATAACTGAGATTGAGCTCCATAACTTCATGACGTTTAATCAGTTGAAATGCAAGCCTGGTTCGCGTTTAAACCTGGTCATCGGTCCTAACGGCTCCGGAAAAAGCTCTCTTGTATGCGCCATTGCCCTCGGTCTTGGTGGTGATCCTCAGATACTCGGAAGAGCAGGAAGTATTGGAGCATTTGTGAAGCGAGGAGAGGAGTCTGGACATATCAAGATCACATTGAGAGGTGACACTACAGAAGAACACATTAGCATTACTCGTAAGATAGATACGAGTAACAAGTCAGAGTGGTTATTAAATGGGAAAGTGGCACCAAAGAAGGATGTTATTGAAGTTGTCCAGCGGTTTAATATCCAAGTCAACAATTTGACTCAGTTTCTACCGCAAGACAAAGTTTGCGAGTTTGCCAAGTTAACTCCTGTCGATCTGTTACGTGCAACAGAAAATGCCATTGGTGATCCTCGATTACCAATGCAACATGATGCTCTTATAGAGAAAAGTGGTCAGCTGGGGAGACTTCAAAGAGCTGTTGATGGTAATAAAGAGATGTTAGATCAGCTCAAGGCACAACATGCTGAGCAGGAACGAGATGTTGAACGAGTTCGTCAGAGAGAAGAACTTCTAGATCAGGTTGAGTTAATGAAGAAGAAATTGCCTTGGCTGAAGTATGATTTGAAGAAGGCTGATTACGTGGAAGCAAAAAAGCAGGAAGCTGATTCAAGGAGAAAATTTGATGAAGCTGCAAAGTTATTAAATGATCTTAAATTACCTATTGAGAAGCAGAAACAAGAAAAAGCACTACAGGAGTCTAAGCGTAAAAATTCGAATAATGTTTTGACTGATAGTGCCCAAAGGCGCCAGCAACTTCAAGACAGAGAAAATCAGTTGGGAGTACAAGTAGCTGGAAAATACAGGGAAATTGAAGATTTGAAGAAGCAAGAAGAGTCTCGTAAACAAAGGATTCTGAAAGCTAAAGAGGATCTTGCTGCTGCGGAACTGGAATTTACAAACCTGCCACCTTATGACTTTCCAAAGGATGAATATGATAGATTTAAGAATCAAATTGTAGAACTTGAAGCCAATGCAAAACAGATTCGGGGACAAAAGTTGGATAAGGAGAAACTCTTAGGGGAGAACAGAAGAAATCTGACACAATTGGTGGGCAGGTTAAAAGATATGGAGAATAGAAATTCTAAGCTACTCTACGAGCTGCGTAAATCTGGGGCAGATAAAATCGTTGACGCTTATCGTTGGTTGCAAGAAAATCGCGATCAGTTAAAGAGAGAGGTTTACGGACCTGTTCTTCTTGAGGTTACTATCAAGGACCGATCTCATGCAGAATACTTGGAATCTCATGTTCCACATTATGTTTGGAGGTCCTTCATTGCTCAGGATCCTAGTGACCGAGATTTTCTTTTCAGAAACATGAAGTCCTTTGAAATTCCAGTCCTAAATTATGTAAGGACTAAAGAAAATAGTAGAGCCTTACCACAAATATCTGATCAGATGCTTAAGCTTGGAATATATACTCGGCTGGACCAAGTCTTTGATGCTCCTGCTGCAGTCAAAGAGGTTTTAATTAGTCAGTGTGGACTTGACTACTCATACATTGGTACAGAAGAAACTGACCAGAGGGCAGATGAGGTTGCAAAGTTGGGAATACTTGACTTTTGGACTCCAGCTAATCATTATGGTTGGTCCAAATCTCGATATTCTCAGCATGTCGCTGCAAGTGTGGAGCCAGTTCCTCCCTCTAGACTTCTTTCATGCAGCTCAGACAATACAGAAATTGAGTCTCTTAGGTCCAGGAAAGATGAACTTGAACAGACAATAAGAGAATTTGACGAGATTATTAAATCACTTCAGTTTAAGTTAAACCAGACTGAAAATGAAGCTGCGAAATTTCATAAACAGAGGGAAGAAATTTTCAACAGGGCACAACATGAGAAGAAGAAGCGGAAGGAGATGGAAAACCGTATCAACCAGAGGAGAACAAGATTAAAATCCATTGAGGAGGAGGGAGATGTTGACAGTCAGATGGTCGGCCTTGCTGATCAAGCTGCAAATTTGAATGTCCAGAGGCTTAGAAATGCATTTCATATTAAGGATTTAATTGCGGAAGCTCTTTTACACAAATGGAGTTATGCAGAAAAGCACTTATGTGCTCTTGAAATCGATGCAAAGATTCGAGAGGCTGAAGTAGAAATTAAGCAGCAAGAAAGCTTTGCTCTGCAAGCGACCATGCACTTGCAGCAATGCACCAGAGAAGTGGAACGTTGTAGGGAGATGCTTTCAGATGCCAAGAAATATGCAGAATCAATTGCAAAGATCACTCCAGACCTTGTGAAGGCATTTGTTGAGATGCCTGCTACAATTGAGGAGCTTGAGGCTGCAATTCAAGATAATTTAGGTCAAGCTAGTTCTATTCTCCTCCTAAATCAAAATGTTTTAGCAGAATATGAAATGCGACAAAGAAAGATTGATGCCCTTGCAAAAACACTTGACGAAGAGGAGCAGGAATTACAGACCCGTGTGGGTGAAATGGAAGCGTTGAAGGGTAGCTGGCTTCCGACTTTACGGAATCTTGTTTCTCAGATCAATGGGACATTCAGTCGTAACTTTCAAGAGATGGCTGTTGCTGGGGAAGTATCATTAGATGAGCATGACATGGACTTTGGTGCATATGGTATTGTTATTAAAGTGAAGTTCAGGCAAGCTGGACAACTTCAAGTTCTTAGCGCTCATCACCAATCTGGCGGGGAGCGTTCAGTTTCTACCATACTGTATCTTGTTTCTCTCCAAGATCTTACAAATTGTCCATTTAGAGTTGTTGATGAAATTAATCAAGGAATGGACCCTATCAATGAGAGAAAGATGTTTCAGCAGTTGGTGAGAGCCGCTAGCCAGCCAAATACACCACAGTGCTTTTTGCTTACACCAAAATTGCTGCCAGACCTAGACTATAGTGAAGCTTGCAGCGTCCTGAATATCATGAATGGGCCATGGATTGAACAGCCTGCTCAGTTATGGAGCAATGGAGAATGCTGGAGCACTGTCACCAGAAAACTGGGGCAAACTCAATGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53298.p1 GENE.R_Transcript_53298~~R_Transcript_53298.p1 ORF type:complete len:1052 (+),score=236.10,SMC_N|PF02463.15|6.9e-24,AAA_23|PF13476.2|5.3e-09,AAA_23|PF13476.2|1.6e+04,AAA_21|PF13304.2|1.1e-05,AAA_21|PF13304.2|6.1e+03,AAA_21|PF13304.2|2.8e+03,AAA_21|PF13304.2|9e+02,AAA_21|PF13304.2|8.7,AAA_29|PF13555.2|1.8e-05 R_Transcript_53298:189-3344(+)
MSERRSKRPKLNRGEDGYLPGNITEIELHNFMTFNQLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQILGRAGSIGAFVKRGEESGHIKITLRGDTTEEHISITRKIDTSNKSEWLLNGKVAPKKDVIEVVQRFNIQVNNLTQFLPQDKVCEFAKLTPVDLLRATENAIGDPRLPMQHDALIEKSGQLGRLQRAVDGNKEMLDQLKAQHAEQERDVERVRQREELLDQVELMKKKLPWLKYDLKKADYVEAKKQEADSRRKFDEAAKLLNDLKLPIEKQKQEKALQESKRKNSNNVLTDSAQRRQQLQDRENQLGVQVAGKYREIEDLKKQEESRKQRILKAKEDLAAAELEFTNLPPYDFPKDEYDRFKNQIVELEANAKQIRGQKLDKEKLLGENRRNLTQLVGRLKDMENRNSKLLYELRKSGADKIVDAYRWLQENRDQLKREVYGPVLLEVTIKDRSHAEYLESHVPHYVWRSFIAQDPSDRDFLFRNMKSFEIPVLNYVRTKENSRALPQISDQMLKLGIYTRLDQVFDAPAAVKEVLISQCGLDYSYIGTEETDQRADEVAKLGILDFWTPANHYGWSKSRYSQHVAASVEPVPPSRLLSCSSDNTEIESLRSRKDELEQTIREFDEIIKSLQFKLNQTENEAAKFHKQREEIFNRAQHEKKKRKEMENRINQRRTRLKSIEEEGDVDSQMVGLADQAANLNVQRLRNAFHIKDLIAEALLHKWSYAEKHLCALEIDAKIREAEVEIKQQESFALQATMHLQQCTREVERCREMLSDAKKYAESIAKITPDLVKAFVEMPATIEELEAAIQDNLGQASSILLLNQNVLAEYEMRQRKIDALAKTLDEEEQELQTRVGEMEALKGSWLPTLRNLVSQINGTFSRNFQEMAVAGEVSLDEHDMDFGAYGIVIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLDYSEACSVLNIMNGPWIEQPAQLWSNGECWSTVTRKLGQTQC*

Click here to download the sequence:
Link to NCBI Protein BLAST