Transcript Information: R_Transcript_53453.p1


Annotated TAIR IDAT2G25320.1
Annotated Gene NameTRAF-like family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:10781951-10788065 | Reverse length=1673
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.565316614086
Replicate 25.5687398941348
Replicate 37.9267481266139
Condition 2: 8 Hour
Replicate 18.01330241586
Replicate 27.9414856396698
Replicate 311.570747805824
Condition 3: 24 Hour
Replicate 112.060362021156
Replicate 28.9752476418684
Replicate 311.423463402325


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53453.p1 GENE.R_Transcript_53453~~R_Transcript_53453.p1 ORF type:complete len:1757 (+),score=419.21,MATH|PF00917.22|2.7e-06,MATH|PF00917.22|2.3e+03,MATH|PF00917.22|2.3e-10,MATH|PF00917.22|0.0012,FancD2|PF14631.2|3.7e+02,FancD2|PF14631.2|2.7e-07,FancD2|PF14631.2|0.00015,FancD2|PF14631.2|0.0036 R_Transcript_53453:257-5527(+)
ATGAAGCAGCAACGCCACCTCCAAAACCACCACCACCACCAACAACCCTCATCTTCATCAACAACATCTTCATCATCAAGAACAACAACAGAAGCAGTTTCTCTCTCCTCCACATCATCAACCCTAACCACCTCTGATCCTCCACCCACCACCATGCCCATGCCCCCATCAGAAGATCCATCCCCATCACCATCATCCACATCCACATCACCATCCCCATGCCCATCCCCATCAACAACATCATCATCATCAACATCCCAAGACACCCTCCATGTGACAACCCGTTCATCAGACTTCTCCTCAATATGCAAGTGGACAGTGAAGAACTTCCCCAAACTTAAAGCCCGAGCACTTTGGTCCAAATACTTTGATGTGGGAGGCTTTGATTGCCGTTTACTTCTCTACCCAAAAGGTGATTCTCAAGCTTTACCTGGTTACATCTCTTTATACCTTCAACTCATGGACCCTTCTAAATCCCTCTCCAAATGGGATTGTTTCATTAGTTATCGTTTATCTATCCTTAATCTTCTTGATGATTCCAAGACCATCCACCGCGATTCGTGGCACCGGTTTTCTTCTAAGAAGAAATCCCATGGTTGGTGTGATTTCACTCCTTCCACTACCATTCTTGACCCTAAAGCTGGGTTCCTTATTTCCCACAACAATCACAGTTTGGACTCTATTTGTATTGTTGCTGATATTATTATTCTCAATGAGAGTGTTTCTTTTGTTAGGGACACCATCAATTGTAGTTCCAATAATAGTAATAGTAATGATGGTACTGGTATTAATAATAGTGGTAATGGTGGGGTTGAGTTGCAATTGTGTGATACATTGAGTGGGAAGTTTACTTGGAAAGTGCATAATTTTAGTTTGTTTAAGGAGATGATTAAAACCCAGAAGATAATGAGCCCGGTTTTCCCAGCTGGGGAATGTAATTTGAGGATTAGTGTATACCAGAGCTTGGTCAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGATATGGAGAAGAGCAGTAGTGGTAGTGGTGGTGGTGGTGGGAGCACGGGGTCGAGCAATAGCACTTCATTGGTGCAGTCTGATAGGAGTTGTTGGTGCTTGTTTAGGATGTCGGTGTTGAACCAGAAGCCGGGGTTGAATCATATGCAGAGGGACTCGTATGGGAGGTTTGCTGGGGATAATAAGAGTGGGGATAATACGAGTTTGGGGTGGAATGATTATATGAAGATGTCGGATTTTGTTGGGGACAATGCTGGGTTCTTGGTGGATGATACCGCAGTTTTCAGCACCTCGTTTCATGTGATTAAGGAGTTTAGTAGCTTCTCGAAGAATGGGGGGTTGCTTGGGGCTAGGAGTGGAGGCGGTGGCGGCGGGTCTAGGAAGTCGGATGGTCATAGTGGGAAGTTTACTTGGAGGATTGATAATTTTACCAGGTTGAAGGACCTTCTCAAGAAGAGGAAGATCACTGGGCTTTGCATTAAGAGCAGGAGGTTTCAGATTGGCAACCGTGATTGTCGCCTTATCGTTTATCCCCGAGGGCAGTCTCAACCTCCATGCCACCTCTCTGTGTTTCTTGAGGTTACTGATTCACGAAATACTTCAAGTGATTGGAGTTGCTTTGTCAGTCATAGATTATCAGTTGTGAACCAGAAGATGGAGGAGAAGTCTGTGACAAAAGAATCACAAAATCGATACTCAAAAGCTGCAAAAGACTGGGGCTGGCGTGAATTTGTGACGCTTACTAGCTTGTTTGATCAGGACTCAGGGTTCCTTGTGCAGGATAGTGTTCTTTTCTCAGCAGAGGTTCTTATATTGAAGGAGACATCCATAATGGAGGAATTCTCTGAGAATGAAGCCGAGAGTGATAGCAATGGAAAGAAAAGCTCTTTTACTTGGAAAGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAAACTCGGAAAATTTTCAGCAAATTCTTTCAGGCTGGTGGATGTGAGCTACGTATTGGTGTTTATGAGTCCTTTGACACAATATGTATATATCTGGAGAGTGATCAATCATCTGGAACTGATCCTGATAAGAACTTCTGGGTTAGATACAAAATGGCTGTAGTGAATCAGAAGAGCCCTGCTAAAACGGTTTGGAAGGAGTCCTCTATTTGTACAAAGACTTGGAACAATTCTGTGCTCCAGTTTATGAAGGTTTCTGATATGCTAGAACCAGATGCAGGGTTTCTGTTGCGAGATACTGTGGTTTTTGTCTGTGAAATCTTGGACTGTTGTCCTTGGTTTGAGTTCTCTGACTTAGAGGTTCTTGCCTCTGAGGATGATCAGGACGCCCTAACAACTGACCCTGATGAACTGATGGACTCCGAGGACAGTGAAGGAATAAGCGGTGATGAGGAGGACATCTTTAGAAACCTTTTGTCTAGAGCAGGATTCCACCTTACATATGGGGATAATTCTTCACAACCACAAGTGACCTTAAGAGAAAAGCTCTTAATGGATGCTGGTGCTATAGCTGGTTTTTTGACTGGACTGCGTGTTTACCTTGATGATCCTGCTAAAGTAAAGCGGCTACTCCTCCCTACTAAGCTTTCTGGTACTAATGAGGGAAAGAAGGCCTCAAAGTCTGATGAATCATCTCCTAGTTTAATGAATTTGTTGATGGGAGTGAAAGTATTGCAGCAGGCTATTATCGATTTACTCTTAGATATAATGGTTGAGTGTTGCCAACCTTCAGAAGGGATTTCTAATGAGGATGTAGGTGATGCAACTTCGAAGGGCTCCCCAAAAGATAGTGGAGCTACATCACCCTTACAATCCGAGAGGGAAAGCGGAGCAGCAGAACAAATAGAACACCCTTTGTATGAGAGGCTGGATTCAGTAGTCAATGAGAGTGTGAACAGCGCTGCTTCCACAAGCATGAGAACAAGTGCGAGTGCAGGAGCTAGTGATCCTGATGAGCATGAAAAGGCTGTTCCTGGACAGCCTGCCTCTCCACCAGAAACTTCAGCTCGAGAATCATCTGAAACAGCTTCTCTCCGCTCAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTGTTAGGATTGATTGTAAATTCATTGCGAGCTTTGGATGGAGCTGTTCCTCAAGGTTGTCCTGAGCCAAGAAGGAGGCCCCAATCTGCGCAAAAGATTGCTCTTGTCTTGGATAAAGCTCCTAAGCATTTGCAACCAGATCTTGTTGCACTGGTGCCCAAGTTAGTTGAGCATTCTGAGCATCCTCTGGCAGCTGCTGCCCTTCTTGACAGGCTCCAAAGGCCTGATGCAGAGCCTGCATTAAGGCTACCTGTCTTTGGTGCTTTAAGTCAACTGGAGTGCAGCAGTGAAGTTTGGGAACGCGTTCTATTTCAGTCTTTTGCACTTCTTGCTGATTCAAATGAGGAACCTTTGGTAGCTACAATAAATTTTGTGTTGAAAGCTGCAACTCAATGCCAGCATCTTCCTGAAGCTGTTAGATCTATCCGTGTAAGGCTAAAGCAATTGGGACCTGAGGTGTCTCCTTGTGTCCTTGATTTTCTAAGTAGGACTGTACATAGTTGGGCGGATGTTTCAGAAACCATACTAAGAGATATCGATTCTGATGATGAATGCGGTGTAAATTGTTCGGCAGTTCCAAGTGGGGTCTTCTTTTTCGGTGAAAATGGCCCCCCTTCCGAAATCATACATTCAGTGAATGAGCATTCCTTCTGTGGTAGTCATCATTTTGCTGATATCTTTCTCCTGATGGAGATGTTGTCCATACCTTGTCTTGCCGTTGATGCTACTCAGACATTTGAGAGAGCAGTATCTCATGCGGCCATAACAGCTCCATCATTAGCGATGGTCTTGGAGAGACGGCACTCTCAAAGAGCAGCCTATAATACAAGATTTCTTGCTGAAGGATTGCAGCCTGCAGATACAGTATTAGAGGGTGAGGTCAATGATCAACTTAGAGCCCCCCAAGATGACTTTTCTACACTTCTTGGTCTGGCAGAGACATTGGCACTTTCCAGAGATCCTCGGGTAAAGGGCTTTGTAAAGCTGCTTTATACAATATTGTTTAAATGGTATGCTGATGATTCCTATCGTGCGAGAATGCTTAAACGATTGGTTGATCGTGCGACTAGTAGTACAGATAACACTCGAGAAGTAGATTTTGATATGGAAGTTCTGGTGCTTCTTGTTTGTGAGGAACAAGAAGTCATAAGACCAGTTTTGAGCATGATGCGAGAGGTTGCTGAACTTGCAAATGTGGATCGTGCAGCTCTTTGGCATCAACTTTGTGCTAGCGAAGATGAAATCATTAGAATTCGTGAAGAGCGGAAAGCTGAGGTTTCTAATTTGGTGAAAGATAAAACTCTTTTATCACAGAAGCTTAATGATTCTGAGTCTACAAACTGTCGCCTTAAGTCTGAAATGAAGGCTGAGATGGATCGTTTTGTTCGTGAGAAAAAGGAGCTTTCAGAGCAAAGGCAAGAAGTTGAAAGTCAACTTGACTGGCTTCGTGCTGAGCGAGAAGAGGAGATTGCAAAGCTAACAGCTGATAAAAGGGCTCTGCAGGATCGTTTGCATGATGCAGAGGTGCAACTGGCTCAGTTGAAGTCCAGGAAGCGCGATGAGCTAAAGAGAGTGGTGAAGGAGAAAAATGCTCTTGCTGAGCGTTTGAAAAATGCTGAAGCTGCCAGGAATAGATTTGATGAAGAGTTGAAACGATATGCTACTGAGAAAGTCACGAGGGAGGAAATTAGGCAGTCCTTGGAGGACGAGGTGCGAAGACTAACCCAAACAGTGGGGCAAACAGAAGGGGAGAAGCGAGAGAAGGAGGAGCAGGTTGCTCGATGTGAAGCATACATTGATGGGATGGAGTCAAAGTTGCAGGCTTGTCAGCAATATATTCATACACTTGAGGCTTCACTTCAAGAAGAAATGTCCCGACATGCCCCTCTTTATGGTGCTGGTTTGGAAGCGCTTTCAATGAAGGAGCTTGAGACCTTGGCTCGTATCCATGAAGAAGGCCTACGTCAGATCCATGCACTCCAACAGCAGCGCAAGGGCTCTCCTGCTGGTAGTCCTCTTATGAGCCCGCACACCCTTCCACACACACATGCATTGTTTCCGAACACACTGGCACATGCAGCACCACCTCCACCATCACTGGCTGTCAGAATGCCCCACAATCTCATCCCAAATGGAGGCGGGGTTCATGGCAACGGCCATGTTAATGGTGCGGTGGGTCCCTGGTTCAGCCATTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53453.p1 GENE.R_Transcript_53453~~R_Transcript_53453.p1 ORF type:complete len:1757 (+),score=419.21,MATH|PF00917.22|2.7e-06,MATH|PF00917.22|2.3e+03,MATH|PF00917.22|2.3e-10,MATH|PF00917.22|0.0012,FancD2|PF14631.2|3.7e+02,FancD2|PF14631.2|2.7e-07,FancD2|PF14631.2|0.00015,FancD2|PF14631.2|0.0036 R_Transcript_53453:257-5527(+)
MKQQRHLQNHHHHQQPSSSSTTSSSSRTTTEAVSLSSTSSTLTTSDPPPTTMPMPPSEDPSPSPSSTSTSPSPCPSPSTTSSSSTSQDTLHVTTRSSDFSSICKWTVKNFPKLKARALWSKYFDVGGFDCRLLLYPKGDSQALPGYISLYLQLMDPSKSLSKWDCFISYRLSILNLLDDSKTIHRDSWHRFSSKKKSHGWCDFTPSTTILDPKAGFLISHNNHSLDSICIVADIIILNESVSFVRDTINCSSNNSNSNDGTGINNSGNGGVELQLCDTLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSLVNGVEYLSMCLESKDMEKSSSGSGGGGGSTGSSNSTSLVQSDRSCWCLFRMSVLNQKPGLNHMQRDSYGRFAGDNKSGDNTSLGWNDYMKMSDFVGDNAGFLVDDTAVFSTSFHVIKEFSSFSKNGGLLGARSGGGGGGSRKSDGHSGKFTWRIDNFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDSVLFSAEVLILKETSIMEEFSENEAESDSNGKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSSGTDPDKNFWVRYKMAVVNQKSPAKTVWKESSICTKTWNNSVLQFMKVSDMLEPDAGFLLRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELMDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNSSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGTNEGKKASKSDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGISNEDVGDATSKGSPKDSGATSPLQSERESGAAEQIEHPLYERLDSVVNESVNSAASTSMRTSASAGASDPDEHEKAVPGQPASPPETSARESSETASLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVALVPKLVEHSEHPLAAAALLDRLQRPDAEPALRLPVFGALSQLECSSEVWERVLFQSFALLADSNEEPLVATINFVLKAATQCQHLPEAVRSIRVRLKQLGPEVSPCVLDFLSRTVHSWADVSETILRDIDSDDECGVNCSAVPSGVFFFGENGPPSEIIHSVNEHSFCGSHHFADIFLLMEMLSIPCLAVDATQTFERAVSHAAITAPSLAMVLERRHSQRAAYNTRFLAEGLQPADTVLEGEVNDQLRAPQDDFSTLLGLAETLALSRDPRVKGFVKLLYTILFKWYADDSYRARMLKRLVDRATSSTDNTREVDFDMEVLVLLVCEEQEVIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRIREERKAEVSNLVKDKTLLSQKLNDSESTNCRLKSEMKAEMDRFVREKKELSEQRQEVESQLDWLRAEREEEIAKLTADKRALQDRLHDAEVQLAQLKSRKRDELKRVVKEKNALAERLKNAEAARNRFDEELKRYATEKVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHALQQQRKGSPAGSPLMSPHTLPHTHALFPNTLAHAAPPPPSLAVRMPHNLIPNGGGVHGNGHVNGAVGPWFSHS*

Click here to download the sequence:
Link to NCBI Protein BLAST