Transcript Information: R_Transcript_53560.p1


Annotated TAIR IDAT5G40670.1
Annotated Gene NamePQ-loop repeat family protein / transmembrane family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16285968-16287591 | Forward length=270
E-Value5E-140
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 128.862082664862
Replicate 220.768903660887
Replicate 323.40291241773
Condition 2: 8 Hour
Replicate 117.325738374224
Replicate 221.06927855794
Replicate 325.163243603713
Condition 3: 24 Hour
Replicate 125.941493365601
Replicate 219.666602693042
Replicate 329.86842011425


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53560.p1 GENE.R_Transcript_53560~~R_Transcript_53560.p1 ORF type:complete len:277 (+),score=37.96,PQ-loop|PF04193.10|7.3e-18,PQ-loop|PF04193.10|6.2e+03,PQ-loop|PF04193.10|3.4e-15,PQ-loop|PF04193.10|4.2e+03 R_Transcript_53560:215-1045(+)
ATGGGAAGTGAGTGGAATTCGTTTCCATTGGAGATTGTTTATGAGGTTTTTGGATGGATTGCTTTCTTTTCATGGTCAATCAGCTTTTACCCGCAAGTTTTCTTGAATTTCAGGCGTAAAAGTGTGGTGGGATTGAATTTTGATTTTGTGGTGCTGAATTTGACAAAGCATAGCTCCTATTTGGTATACAATGCTACTCTTTACTTCAGCTCTGCTGTTCAGAGGCAATACCGTGAGAAATATGGTCTAAAGGAGATGATACCTGTGGCTGCAAATGATGTTGCTTTTTCTATTCATGCTGTCACATTGACAGCACTCACATTGTTCCAGATATATATCTATGAGCGTGGAAGTCAGACGATCTCGAAGATTGCTCTTGCACTTGTTTCTGTTGCATGGTTTGCTGCAGCAATATGTGTATTTATTGCTTTGCCAAGCCATTCTTGGCTTTGGCTGATCTCTGTTTTCAACACAATCCAAGTGGTCATGACAGTCATTAAATATATTCCCCAGGCGGTTATGAACTTCTGCAGGAAAAGCACAGAAGGATTTAGCATAGGAAACATTCTACTCGATTTTCTTGGAGGTGTGACAAATTACGGACAGATGACTGTACAGTCTATAGATCAAGGTTCTTGGGTGAACTTCTACGGAAATATTGGGAAGACATTACTGTCACTTGTCTCGATCTTGTTCGACATTCTGTTCATGTTGCAACATTACGTGTTATATCGTGGGAGGAAGGCAACTCCTCTTCCTTCTACACTCGATAATGTTAGCAAGGAGGCGCTACTAAAAGACTCTCATCAAGCCCAGACAGACCATGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53560.p1 GENE.R_Transcript_53560~~R_Transcript_53560.p1 ORF type:complete len:277 (+),score=37.96,PQ-loop|PF04193.10|7.3e-18,PQ-loop|PF04193.10|6.2e+03,PQ-loop|PF04193.10|3.4e-15,PQ-loop|PF04193.10|4.2e+03 R_Transcript_53560:215-1045(+)
MGSEWNSFPLEIVYEVFGWIAFFSWSISFYPQVFLNFRRKSVVGLNFDFVVLNLTKHSSYLVYNATLYFSSAVQRQYREKYGLKEMIPVAANDVAFSIHAVTLTALTLFQIYIYERGSQTISKIALALVSVAWFAAAICVFIALPSHSWLWLISVFNTIQVVMTVIKYIPQAVMNFCRKSTEGFSIGNILLDFLGGVTNYGQMTVQSIDQGSWVNFYGNIGKTLLSLVSILFDILFMLQHYVLYRGRKATPLPSTLDNVSKEALLKDSHQAQTDHV*

Click here to download the sequence:
Link to NCBI Protein BLAST