Transcript Information: R_Transcript_53648.p1


Annotated TAIR IDAT5G55820.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22586287-22594035 | Forward length=1826
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0009688265491
Replicate 20.44024500872883
Replicate 30.59114161538458
Condition 2: 8 Hour
Replicate 10.51341329728095
Replicate 20.61312095370993
Replicate 31.2296252355746
Condition 3: 24 Hour
Replicate 11.6662924600753
Replicate 20.53359497315913
Replicate 31.3062017313148


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53648.p1 GENE.R_Transcript_53648~~R_Transcript_53648.p1 ORF type:3prime_partial len:620 (+),score=124.45 R_Transcript_53648:164-2020(+)
ATGGCGAAGATAGAGAAGCTATTCGTACAGATCTTCGAGAGAAAGAGGTGGATAATCGAACACTTGAATCAACAAAAACAACTCTACGACCAACACCTCGCTTCCAAGCTCCTAATTCAAGGAATCACTCCACCTCATTGGCTTCTCAATCCTCAATTTCCCTCTTCGACTTGTTCGGATCTCACTGAATTAAATAAAGATGAGCTTATTTCTGGAATACTACTGCCACGGCCTGGAACTTTAGCCGCTTATCCCAGTGGACCTTGCTTTGTGTATGATAGACCAGTTGCAAAAGCAGCTAATGATGATCAACGGCATGAGACTTGTACGAGAACATGTGCCTCCAGCACTGGTTTTGATGCTAATGACCCTGGCATTGTTCCAACATGCCGTGTTCATCAAATGGAAGATGAGCTTGGTGTTGTTCACCCAAGTCGTGTTGATGGCACGGAAGACATGGTCAATTATGTTCCTATGTCTCCAGAGGATCAAACAGATTTAATAGTCTCAAGCACCTACTCTAAGGCGGAACAGTCACTAGCACGGATACAGAGGTCCAGATCCCGTCAGAAGGCTTTGGAGCTTCGGAATAGTGCAAAAGCAAGCGCTAAATGTCACTTACGGAAGGAAGATGATGCTGGTAAAATTTCTGAAACCAGATCATGTAGAGAAGGTCAGCAACTTGATGGCCTGAGGGAATCTCTTGAATTGGTCAAGTCTTCAACATTGTCTGCTGAACCTTGTAGTAAAGAAGAAGCTGCAGCAGGAGATTGCTCAGACAAGGGGAGGAGTGAGGCTTATTGCAAGAAAACCTCACTTTCTGGACATAATGAGGCCAAGGAAGTACAATCTTTAAATTATGAGAAGAAGAAAGAGAAGAGCAACGATTATGGTGAACATAATACTAGTTCCAGAAGCCGCTGCCCACAGTCCATTACTGAAGATTACCACAATGATAGAAAGAGCCGTGAGGTTTATCTGGGTAGAATAACTAGATCTAGAAGTGGCAATGCACGACAGCCAGAAACTAGTGATCCTCAAAATCAAAGAATCACAAGATCTAAGAGCTGCAACACTCAATTCATTAATGCAGATCACGCTATCAGGAGCAGCGAGGTGTACCGCGGTAGAATCACAAGGTCAAAAAGTTATGGCGCAAAACAAGCAGAAAAATGGGATAATGGGAGCAGGACTAAGAATGACATGTCTGTGAAGCCTAAGCAGCTTGACTTTGACGAGGTTGAAGAAAGTTGTTTGTCTGATTTTCCTGCTAAAGGCCAGGACAAACCAGAAGAGAAGACTACTCTCAACGTCGCAGAATATTCAGCTTCTACTCCTTGCGCAATATGTACTGAACTATTTTCTGCACCACATGTTGAGTCATTAGCATGTGAAATCCTGGAGATCTGTGATGGTGAAGCTGTTCACTTGTTCCCTGGTAGTGACAGAACATCAGGAAAGACTTCTTTCATGCCAGATTGTCTTCCTGATTCACAAGTAACTCAAGAGTGTCTGTTAGGCAACACAGTGGACCATGCTTCAGATCCTAACTCATCTGGAACAAATGCAGATAGAATGGCAGAAATATCATCTCAAAAGCATACATGTGAGCCTGATGGGGCATCTGTTGGCCTTGCTGATTCACGAGAAACTCAGGAGCATCTGTTAGGAAACACAGAGGAATATGCTTCAGATCTTAACTCATCCAGACCAGATGCAGATGGAGGCGCAGCATCATTTTCATCTCAAAAGCATACATCATTGTCATCTGTTTCCCTTGCTGATTCACAAGTAAGTCAAGAGCATCTTGTAGGAAACACACGGAGGAGGATTGGATATGAACTCTTTAACAAATCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53648.p1 GENE.R_Transcript_53648~~R_Transcript_53648.p1 ORF type:3prime_partial len:620 (+),score=124.45 R_Transcript_53648:164-2020(+)
MAKIEKLFVQIFERKRWIIEHLNQQKQLYDQHLASKLLIQGITPPHWLLNPQFPSSTCSDLTELNKDELISGILLPRPGTLAAYPSGPCFVYDRPVAKAANDDQRHETCTRTCASSTGFDANDPGIVPTCRVHQMEDELGVVHPSRVDGTEDMVNYVPMSPEDQTDLIVSSTYSKAEQSLARIQRSRSRQKALELRNSAKASAKCHLRKEDDAGKISETRSCREGQQLDGLRESLELVKSSTLSAEPCSKEEAAAGDCSDKGRSEAYCKKTSLSGHNEAKEVQSLNYEKKKEKSNDYGEHNTSSRSRCPQSITEDYHNDRKSREVYLGRITRSRSGNARQPETSDPQNQRITRSKSCNTQFINADHAIRSSEVYRGRITRSKSYGAKQAEKWDNGSRTKNDMSVKPKQLDFDEVEESCLSDFPAKGQDKPEEKTTLNVAEYSASTPCAICTELFSAPHVESLACEILEICDGEAVHLFPGSDRTSGKTSFMPDCLPDSQVTQECLLGNTVDHASDPNSSGTNADRMAEISSQKHTCEPDGASVGLADSRETQEHLLGNTEEYASDLNSSRPDADGGAASFSSQKHTSLSSVSLADSQVSQEHLVGNTRRRIGYELFNKS

Click here to download the sequence:
Link to NCBI Protein BLAST