Transcript Information: R_Transcript_53652.p1


Annotated TAIR IDAT5G55820.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22586287-22594035 | Forward length=1826
E-Value1.7E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3099916006835
Replicate 29.5230506110109
Replicate 37.1013649725105
Condition 2: 8 Hour
Replicate 17.2955472158861
Replicate 26.8781964650209
Replicate 36.6563204205038
Condition 3: 24 Hour
Replicate 18.4741725110705
Replicate 27.3162800903604
Replicate 39.3993038221176


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53652.p1 GENE.R_Transcript_53652~~R_Transcript_53652.p1 ORF type:5prime_partial len:829 (+),score=213.75,INCENP_ARK-bind|PF03941.11|9.1e-09 R_Transcript_53652:2-2488(+)
GAACACAACTTTAGGGATGCCAATGGTTCTTGGCCTTGCTATAAGCGGAGGAGGATCGGATATGAACTCTTTAACAAATCTGCTAGACCGAGTGTAAGAGTGAATCCTTTTGTTTCTAAGGAAAGCATCCCAAGGAATTCTTCAGCAGGTGGGGCCGATAACTCTTCCCATATTTTGCAGAAGTCTATTACTTCTCAGGAGCTAAATGACATGTTATCCAATGTTGACTTTTCTGCTGTTGAGACTCATCAGAGTGGCAAATGTTCTCTCAATAAGGAATCTGGTCTGACTCCAGAGGTCCAGAATGAAAAGGGTGAAGTTGACTTAGAAAGAAGTGTTATGATGCCCTTAACATGTGAACATAGACATTTATCACCATCCAGCGACTCAAAGTGGAAAACTGCAGAAACCTCGGACTGTTTTTCAGATGAAGGAGAATTGAGAGCAGATCCAGAAAGTGCTATTCTTTTCAAGGGACTGGTGTGCAGTGATTTAGAATGTGCTGCTGATGTGGCTGATCATAATGCTGGGGAAAAGTCAACTTCTACTAAAATTGTTGTAGAACCAAGACAATATTTTCATGAAGTAGATGCATTTACGTTTTCAGTTGGGTCACCGGTCATTGAGCAGATGGATGCTTGTGTATCCAATGCCGATGAGATTGCGCCAGAGTTTACGAGTTTCATCATTGCTGAGAAAGAGGATAGTGTACAAAGTTCTGGAGTAAAACCCATACAAGGTGAACTCCCATTTATGGGTGACATCACAGAAAAAACGAGTTTGCCTGGGAAAATGTGCAGAGCTGCAAGCTTGAGTACTCCTGCATCCCCTTTTCCTAGTTCATACAAATTGCACCTGACACCAGGTGTATACCGCTCAGTACCAAAGGGGCTTCTAGAGAACATTGATTTAGCAAGCAACCAGCTGTCCCATGGTAGTGCTTTAGAAGGAAAATCTTATTCTGATTACTACTCGTTTCCTGGCAGTCGACTAAACTGGGAAATTGGTAAACCTTTCATTTCTCCTGTAGGAAAGGGGTTGAAAGAGATCAAATCTAAATCTGGTGGCTCAAACAAGCGAGTGAGTGGCAATCCCGAACTTGTTTGCTTCCCCATTCAGGAAGATCCTGAAAGTAGTGAGGAAGATGCGTTTGTAAATAACATGGCTGATATGAGCATGAAGAAAATGGATTCATCTCTGAAAAGAAGCTCCATTAGAGAACCACTGCGTGACATTACTGAAAAGAATGAAGGTATTTTGGATCCAACTCATGAAGTTGAGAGGGGTAGTTTAGAATCTGTAAGTACAGAAATCAGTGTGAGTGAGATGCATAATGAAGACACTAAAAAGAATGAAATGCATCACGAAAGCAGACAGAGAATGCAAGGAAAAGAGAACCAGAGTTTGTTAATTGGTGTGAACAGCATAATGAAGCACTCTACATCATGTAGTATTCGGCATAGCAAACCAAAGCTATCTGGAAAATCTAGCTTGAGAAGCAGAGGGCAAAGTCTGTCAGAGAAGGATCCAAGATGCAGTAACCTTAGTAGAGCGCAAAGTTTGTTGGAGAAGGAACCAAGACGCAATAACATTGTGTCCAATGTGAAATCCTTTGTTTCACTCGTTCAACAAAAACAGGCAGCTGCAGCTGTCCCTGCAAAGAGAGATGTAAGAATCAAGGCTCTGGAAGCAGCAGAGGCCGCCAAGCGTCTTGCAGAAAAGAGAGAGAATGAACGGAAGCAGAAGAAAGAAGCTCTGAAACTTGAGCGTGCAAGAGTAGAGCAAGAAAATTTGAAGCAAATGGAACTAAAGAAAAAATTGAAAGAAGAGGAAAAGAAGAAACGAGATGCTGAGAATGCAGCAAGGAAAAGACAGAGAGAAGAAGAAGAGAGAAAAGAGAAGGAAAAGAAAAGAAAACGCATTGAAGAAGCCCGATGTCATAAAAAGGAAGCAGAAGACAAGATTCATGCTTGGAAGGAGGAATCGAAATGTGGAACTCAGGATGGGAGAGAGCGTGAAAAGGACTTTAGCAACGAACTAGAAAATCAAGTTGACAGAGAAGCGGAAAATATTTCAAGAAAGCCATTGACAGAAGAGGTTGGAACTGAGAGAATAGAAGCTGATTCTGCAATTCCCACCATTGATAATAAAACTTCTACTTGTTCTTCTGATACTGGAAAGGTAGCAAGCATAGGTGTTGCTGAATTCTCAACACCTAGTTGTGATAAAACCAACCAGCCCAGTAGCCATACAAGCCAAGAACAGTCGTATGATATATCACCATACCAATGTTCGGATGATGAAGAGGAAGAAGAAGAAGAAATACCAAACAAGAAGTTTATCCCAACATGGGCCAGTAAAAGTCGTGTGGCAGTGGCATTATCCTCTCTGAAACAATTTGATCCCGATTCAATATTCACTCCTGGAAGCTTTTGCAGTTTGGAGGAAGTTCTTTTACCCAGAAGGCTACCACAGAAACAGGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53652.p1 GENE.R_Transcript_53652~~R_Transcript_53652.p1 ORF type:5prime_partial len:829 (+),score=213.75,INCENP_ARK-bind|PF03941.11|9.1e-09 R_Transcript_53652:2-2488(+)
EHNFRDANGSWPCYKRRRIGYELFNKSARPSVRVNPFVSKESIPRNSSAGGADNSSHILQKSITSQELNDMLSNVDFSAVETHQSGKCSLNKESGLTPEVQNEKGEVDLERSVMMPLTCEHRHLSPSSDSKWKTAETSDCFSDEGELRADPESAILFKGLVCSDLECAADVADHNAGEKSTSTKIVVEPRQYFHEVDAFTFSVGSPVIEQMDACVSNADEIAPEFTSFIIAEKEDSVQSSGVKPIQGELPFMGDITEKTSLPGKMCRAASLSTPASPFPSSYKLHLTPGVYRSVPKGLLENIDLASNQLSHGSALEGKSYSDYYSFPGSRLNWEIGKPFISPVGKGLKEIKSKSGGSNKRVSGNPELVCFPIQEDPESSEEDAFVNNMADMSMKKMDSSLKRSSIREPLRDITEKNEGILDPTHEVERGSLESVSTEISVSEMHNEDTKKNEMHHESRQRMQGKENQSLLIGVNSIMKHSTSCSIRHSKPKLSGKSSLRSRGQSLSEKDPRCSNLSRAQSLLEKEPRRNNIVSNVKSFVSLVQQKQAAAAVPAKRDVRIKALEAAEAAKRLAEKRENERKQKKEALKLERARVEQENLKQMELKKKLKEEEKKKRDAENAARKRQREEEERKEKEKKRKRIEEARCHKKEAEDKIHAWKEESKCGTQDGREREKDFSNELENQVDREAENISRKPLTEEVGTERIEADSAIPTIDNKTSTCSSDTGKVASIGVAEFSTPSCDKTNQPSSHTSQEQSYDISPYQCSDDEEEEEEEIPNKKFIPTWASKSRVAVALSSLKQFDPDSIFTPGSFCSLEEVLLPRRLPQKQG*

Click here to download the sequence:
Link to NCBI Protein BLAST