Transcript Information: R_Transcript_53752.p3


Annotated TAIR IDAT5G05800.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:1743234-1744751 | Reverse length=449
E-Value2E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5970420182255
Replicate 21.3997533610865
Replicate 32.5451930662392
Condition 2: 8 Hour
Replicate 12.539274883418
Replicate 21.8219977796522
Replicate 32.8235838742824
Condition 3: 24 Hour
Replicate 11.8706361444796
Replicate 22.2872120330969
Replicate 31.9455737499464


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53752.p3 GENE.R_Transcript_53752~~R_Transcript_53752.p3 ORF type:5prime_partial len:135 (+),score=28.43,Myb_DNA-bind_3|PF12776.3|5.3e-30,Myb_DNA-bind_4|PF13837.2|4.3e-06 R_Transcript_53752:2-406(+)
AGATCTCTTGCTGCTGGTAATCCTAATATTCAAGCTCCTCGTCCTTCAAAACAATCTCAATCATCACAAAGCTGTTCTCAGATGTCTAAATTGGTAGTGAAGAAAGAGAAGGCCTGTTGGGATGATTTTACTACTAGGATTTTTTGTCAAGTGTGTGCCGAGCAAGTCCATTTGGGGAATAGACCTCATACACATTTTAACAAGGAAGGATGGAAGAATGTGATTAATAACTTTGCACTAAGGACAAACAAGAAGTATTCATATTTGCAGTTGAAAAATAAGTGGGATAAATTGAAAAACGAGTTTCAAGCATGGAAGAAAGTAGAGTCTCATACTGGTTTAGGGTGGAATCACGAGAAGAACACTATAGATGCTGATGATGCATGGTGGGCAACACAGGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53752.p3 GENE.R_Transcript_53752~~R_Transcript_53752.p3 ORF type:5prime_partial len:135 (+),score=28.43,Myb_DNA-bind_3|PF12776.3|5.3e-30,Myb_DNA-bind_4|PF13837.2|4.3e-06 R_Transcript_53752:2-406(+)
RSLAAGNPNIQAPRPSKQSQSSQSCSQMSKLVVKKEKACWDDFTTRIFCQVCAEQVHLGNRPHTHFNKEGWKNVINNFALRTNKKYSYLQLKNKWDKLKNEFQAWKKVESHTGLGWNHEKNTIDADDAWWATQE*

Click here to download the sequence:
Link to NCBI Protein BLAST