Transcript Information: R_Transcript_53833.p1


Annotated TAIR IDAT1G47570.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:17478919-17483229 | Forward length=466
E-Value6.1E-208
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.190827450888
Replicate 212.896434522942
Replicate 314.810390687167
Condition 2: 8 Hour
Replicate 112.876187601569
Replicate 214.120125817818
Replicate 315.217621834764
Condition 3: 24 Hour
Replicate 115.288712140863
Replicate 212.31101735487
Replicate 314.717594530845


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53833.p1 GENE.R_Transcript_53833~~R_Transcript_53833.p1 ORF type:complete len:464 (+),score=69.99,zf-C3HC4|PF00097.21|2.7e-07,zf-C3HC4|PF00097.21|7.8e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+02,zf-RING_2|PF13639.2|2.6e-06,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|4.3e+03 R_Transcript_53833:125-1516(+)
ATGGAAGCTGGGGAATCATCTAGTTCAAAGCCCCCTCATGAAGAAGTTTGGGCTAAACTTGTTCCATCAGATTCAAGGTATGCAAGTATTGAGATCAGGTCAAATGATATGACAGTATGTTCTCAGATCACATCTACTTCTGATGAGCTCGAATGGTGCCAGATAGTGAGGAACGTTGATCGCTGTTCTGCCACAATTAGAAACAAGAGGTCAAATGTGATACTTGTGGATGGGACTGTACTCCAGAGTGAAGGTGTTGTTGGTATTAAGTGTGGCAGTATCATAATACCAGCTTCAGTCAGTCAAGGGTATTTGAGCTACAAATTTGAGGTGATGCCCGTGCTGGAAGATTCTTCTGGAAAAAAGTCGAAGATTTTCTTGGACGGTGACCACACAAAATGCAGTATATGTCTGAATGTTTGGCATGATGTTGTTACGGTTTCCCCATGCCTTCACAACTTCTGTAATGGATGCTTCTCACAATGGCTAAAGAGGTGTCAGGATAGGCATGCCACTGTTTTATGCCCCCAATGCAGAGCAGTTGTGCACTTCGCTGGGAGAAACCACTTTCTGCATGGTATTGAGGAGGATATTTTGCAGGCTGATGCTTCATTACGACGTTCCGCAGACGAACTTGCCCTATTAGATTCTTGTGCATCCATAAAGTCCAGTCTTGTTATCACTTCAGGGGAAAGGCGTCAGAAGAGGGCACGTTCATCAATACCAATTTATGAAGAAAGTGATGAGATGGAACTATCATGTCCTCAGTGTGGGATTGGATTTGGTGGTTTTCGTTGCAGTGAAAATACCATCCATTTGCAATGTCATGCATGCGGAGGAATGATGCCCTCAAGATCTGATATCAGCACACCACAGCATTGTTTAGGTTGTGATAGAACATTTTGTGGTGCTTATTGGCATGCTCAGGGAATTTTGGAGAGTGACTCTCATCCTATGTGCAGCCCTGATTCATTAAAACCTATCTCAGAATGTAGGGTGTTGAGCATTCCTTTTGTAGCGCATGGAAGGAATCAATTTGAGAAAGATATCACAGACAGGTGCATAAGACATATGGGTAAAACACTACAAGATGTCATTTCAGAATGGGTTACAAAGTATTTCAACCGAGAAATTGACCGCTCAAGGATGCCTCTGAAGCATCCCGAAATGATAACTGCTGGGACTCGGGTGTGCAATGATTGTTATGACAAATTGGTTTCATTTCTTCTCTACTGGTTCCGGGTTTCATTGCCTAATCATGTTTTGCCCCCAGAAGCTTCGAATAGGGAAGATTGCTGGTATGGATTCGCTTGTCGAACGCAACATCATAGCGAAGCTCATGCACGTAAGCGTAATCATGTTTGCCGGCCAACCAGGGGTTCCCAGATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53833.p1 GENE.R_Transcript_53833~~R_Transcript_53833.p1 ORF type:complete len:464 (+),score=69.99,zf-C3HC4|PF00097.21|2.7e-07,zf-C3HC4|PF00097.21|7.8e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+02,zf-RING_2|PF13639.2|2.6e-06,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|4.3e+03 R_Transcript_53833:125-1516(+)
MEAGESSSSKPPHEEVWAKLVPSDSRYASIEIRSNDMTVCSQITSTSDELEWCQIVRNVDRCSATIRNKRSNVILVDGTVLQSEGVVGIKCGSIIIPASVSQGYLSYKFEVMPVLEDSSGKKSKIFLDGDHTKCSICLNVWHDVVTVSPCLHNFCNGCFSQWLKRCQDRHATVLCPQCRAVVHFAGRNHFLHGIEEDILQADASLRRSADELALLDSCASIKSSLVITSGERRQKRARSSIPIYEESDEMELSCPQCGIGFGGFRCSENTIHLQCHACGGMMPSRSDISTPQHCLGCDRTFCGAYWHAQGILESDSHPMCSPDSLKPISECRVLSIPFVAHGRNQFEKDITDRCIRHMGKTLQDVISEWVTKYFNREIDRSRMPLKHPEMITAGTRVCNDCYDKLVSFLLYWFRVSLPNHVLPPEASNREDCWYGFACRTQHHSEAHARKRNHVCRPTRGSQM*

Click here to download the sequence:
Link to NCBI Protein BLAST