Transcript Information: R_Transcript_53965.p1


Annotated TAIR IDAT4G30700.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:14962617-14964995 | Reverse length=792
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.737274202543
Replicate 20.50625597450465
Replicate 31.2209174860893
Condition 2: 8 Hour
Replicate 11.3672310376634
Replicate 21.0499398834059
Replicate 32.6029593909946
Condition 3: 24 Hour
Replicate 12.3890103967915
Replicate 22.0711791343943
Replicate 32.0832206237529


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53965.p1 GENE.R_Transcript_53965~~R_Transcript_53965.p1 ORF type:complete len:788 (+),score=108.34,PPR|PF01535.16|13,PPR|PF01535.16|10,PPR|PF01535.16|0.00012,PPR|PF01535.16|8.9,PPR|PF01535.16|0.014,PPR|PF01535.16|8.1,PPR|PF01535.16|2e-09,PPR|PF01535.16|82,PPR|PF01535.16|0.00065,PPR|PF01535.16|3.6e-07,PPR|PF01535.16|0.042,PPR|PF01535.16|0.064,PPR_2|PF13041.2|0.084,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|6.7e-06,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|4.1e-13,PPR_2|PF13041.2|0.0077,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|1.3e+04,DYW_deaminase|PF14432.2|5.7e-41,PPR_1|PF12854.3|86,PPR_1|PF12854.3|6.6e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|74,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|93,PPR_1|PF12854.3|0.41,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|48,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|82,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|1.3 R_Transcript_53965:160-2523(+)
ATGTTTAACAGAGCCTTGACAGCTTCACCAAAATGTGATCGAAACTTCTTTCTCAACCTCATCTCTAAATCAAAAACCTTCGCAAACCTTAAACAAATCCAAGCTCAAATCTTTCTCAACAGTCTAAATTCAGACATAATAACAGTCACCAAACTCGCACAAAAGCTTTGTGACATAGGAGCTATAGACCATGCTAACCTTCTTGTCTCTTCAACACCAAGTCCTGATCTTTTCCTCCATAATGTCCTCATTCAAGGGTTTTCTCTCAATAATCTACCCTTATCTTCTGTCTCAGTTTATTCCCAATTACGCCGAAAAACAACCCTTAAACCTGATAATTTCACTTATGCTTTCGCTATCTCGGCTTCCGGGTCACTTGAGCATGAAAAGATTGGGATGTTACTTCATGCCCACTCAATCATTGATGGGTTTGGTGCAGATTTGTTTGTTGGGTCTGCTATTATTGATATGTACCTTGATTTTTCCAAAGTTGGTTATGCATATAAGGTGTTCGATAGAATGCCTAAAAGAGACACAGTTTTGTGGAATACTATGATATCTGGGTTAGTCAAGAATTGTTGTTACATTGATTCTATGAGGGTGTTCCGGGATATGATTGGGAGTAACACTCAATTTGATTCGTCGACTTTGTCTGCGATACTTCCTGCAGTTGCTGAGCTGCAGGATTGGAATGTGGGTAAGGGAATTCAGTGCTTAGCTTTGAAAGCAGGTTTCGGTTCTCATGTTTATGTTCTCACTGGCTTGGTTTCATTCTATTCGAAATGTGGGGATGTATCAACAGCCAGAGTGCTGTTTGAGCAGCTAGATAAACCAGATTTGGTATGTTATAATGCAATTATTTCAGGTTATACACTAAATGACGAAACAGAGTCTTCAGTAAGGTTATTTAAAGAATTTCTATCTGGAAAGAAGGTGAACTCCAGCACAATTGTTGGACTTATTCCGGTTGGATCTCCTTTTGGTCATTTGAATTTGAATTCATCCATCCATTGTTTATGTGTGAAAGCTGGGATGATAGCAAATCCTTCGGTTTCCACTGCATTGACTACTGTCTATTCTAGGCTGAATGAAATTGATAGGGCAAGACAACTATTTGATGAGTCACCAGAGAAAAGCTTGGCATGTTGGAATGCCATGATATCGGGGTATACTCAAAATGGGTTGACGGAAAAGGCAGTTTCACTGTTTCAGGAAATGCAGAAGTGTCGTGTTCATCCAAATCCTGTTACAGTTACAAGTATCCTGTCAGCATGTGCACAACTTGGAGCACTTAGTTTAGGAAAGTGGGTTCATGAATTAATAAACAAAGAAAAGTTGGAATCAAATGTATATGTATTAACTGCTTTGATTGACATGTATGCAAAATGTGGGAGTATATCAAAGGCTAGACAAACATTTGATTCGATGCCAGAGAAAAACGTCGTGTCCTGGAATGTGATGATTTCTGGTTACGGCCTTCACGGGCATGGATATGAGGCACTAAATATATTTAATGTGATGTTGGAATCTGGCATTCGTCCCAGCGGGGTTACTTACCTCTGTATTCTTTATGCTTGTAGTCATGCGGGCTTAGTAAGTGAAGGAGATAAGATTTTCCATTCCATGGTCCATGATCATGGCTATGAACCAGTAGCTGAGCATTATGCTTGTATGGTAGATATCTTTGGTCGAGCAGGACAACTAGAGAAGGCTTTAAACTTCATTGAGAATATGCCTGTTAAACGTGGTCCTGTTGAGTGGGGAGCGTTACTCGGTGCATGCATGATTCACAAGGATACAAAACTGGCACGCTTAGCTTCTGACAAATTGCTTGAGTTAGACCCTGAAAATGTTGGATATTATGTCCTATTGTCCAACATTTATTCAGCTGATCGCAACTACTGGCAGGCTGCTTCTGTACGACAAGTGGCTAAGAAGAGAAGGTTGGCAAAGGCACCTGGGTGCACCCTAATAGAGTTGGGTGAAACTCCTTATGTCTTTACTTGCGGTGATCGGTCCCACCCACAAACAACTGCTATATACGCAAAGCTGGAGAATTTGATGGCCAAAATGAAGGAGGCTGGATATCAGGCTGAGACTGAGACAGCTTTGCATGATGTTGAGGAGGAGGAGAAGGAGCTCATGGTAAATGTTCATAGTGAAAAATTGGCAATAGCTTTTGCCCTCATTTCTACGGAGCCAGGAACTGAAATCAGGATCTTCAAGAACCTCAGGGTTTGTTTAGACTGTCACAATGCAACAAAATTCATCTCCAAGATTACTGAACGAGTTATTATCGTTAGAGATACTAACAGATTCCATCATTTTAAAGACGGCAAGTGTTCTTGCGGAGACTACTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53965.p1 GENE.R_Transcript_53965~~R_Transcript_53965.p1 ORF type:complete len:788 (+),score=108.34,PPR|PF01535.16|13,PPR|PF01535.16|10,PPR|PF01535.16|0.00012,PPR|PF01535.16|8.9,PPR|PF01535.16|0.014,PPR|PF01535.16|8.1,PPR|PF01535.16|2e-09,PPR|PF01535.16|82,PPR|PF01535.16|0.00065,PPR|PF01535.16|3.6e-07,PPR|PF01535.16|0.042,PPR|PF01535.16|0.064,PPR_2|PF13041.2|0.084,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|6.7e-06,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|4.1e-13,PPR_2|PF13041.2|0.0077,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|1.3e+04,DYW_deaminase|PF14432.2|5.7e-41,PPR_1|PF12854.3|86,PPR_1|PF12854.3|6.6e+02,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|74,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|93,PPR_1|PF12854.3|0.41,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|5.1e+02,PPR_3|PF13812.2|48,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|82,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|1.3 R_Transcript_53965:160-2523(+)
MFNRALTASPKCDRNFFLNLISKSKTFANLKQIQAQIFLNSLNSDIITVTKLAQKLCDIGAIDHANLLVSSTPSPDLFLHNVLIQGFSLNNLPLSSVSVYSQLRRKTTLKPDNFTYAFAISASGSLEHEKIGMLLHAHSIIDGFGADLFVGSAIIDMYLDFSKVGYAYKVFDRMPKRDTVLWNTMISGLVKNCCYIDSMRVFRDMIGSNTQFDSSTLSAILPAVAELQDWNVGKGIQCLALKAGFGSHVYVLTGLVSFYSKCGDVSTARVLFEQLDKPDLVCYNAIISGYTLNDETESSVRLFKEFLSGKKVNSSTIVGLIPVGSPFGHLNLNSSIHCLCVKAGMIANPSVSTALTTVYSRLNEIDRARQLFDESPEKSLACWNAMISGYTQNGLTEKAVSLFQEMQKCRVHPNPVTVTSILSACAQLGALSLGKWVHELINKEKLESNVYVLTALIDMYAKCGSISKARQTFDSMPEKNVVSWNVMISGYGLHGHGYEALNIFNVMLESGIRPSGVTYLCILYACSHAGLVSEGDKIFHSMVHDHGYEPVAEHYACMVDIFGRAGQLEKALNFIENMPVKRGPVEWGALLGACMIHKDTKLARLASDKLLELDPENVGYYVLLSNIYSADRNYWQAASVRQVAKKRRLAKAPGCTLIELGETPYVFTCGDRSHPQTTAIYAKLENLMAKMKEAGYQAETETALHDVEEEEKELMVNVHSEKLAIAFALISTEPGTEIRIFKNLRVCLDCHNATKFISKITERVIIVRDTNRFHHFKDGKCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST