Transcript Information: R_Transcript_54080.p1


Annotated TAIR IDAT3G12280.1
Annotated Gene Nameretinoblastoma-related 1
Annotated Gene Symbol(s)RBR1, RBR, RB, ATRBR1, RB1
Annotation TypeOrtholog
Chromosome Positionchr3:3913671-3918433 | Reverse length=1013
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4559733820138
Replicate 24.9232704424423
Replicate 36.5222139559488
Condition 2: 8 Hour
Replicate 14.897172989449
Replicate 26.3447625322773
Replicate 36.9566271244636
Condition 3: 24 Hour
Replicate 17.6902999580487
Replicate 25.106389989444
Replicate 37.7199983033589


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54080.p1 GENE.R_Transcript_54080~~R_Transcript_54080.p1 ORF type:complete len:1015 (+),score=204.72,RB_A|PF01858.13|2.7e+03,RB_A|PF01858.13|8.7e-60,RB_B|PF01857.16|1.9e-40,DUF3452|PF11934.4|1.5e-35,DUF3452|PF11934.4|2.6e+03,DUF3452|PF11934.4|2.1e+03 R_Transcript_54080:165-3209(+)
ATGGAAGACTTGAAGCCTGCAAATTCGATCAAGGAGAATGACAGCGAAATTGAAGCTCGTTTCAATGATCTCTGCAAGAACCAATTTTGTTTGGATGAAAGGATACTATCAGACGCCATAAAACTCTTTATGGAGAGAAGAAGTATCTTGTCAACGAATATTTTAGCTATAGGGAGCATGAAGCTTGAAGAATTGGAAAGATATTTGTTTGCATTTGTTCTCTACTCTGTTAAGAGACTGGGTGAGAGGAATAAAGGTGATGCGAGTGAAGGGGCGAAAGAAAATGGAGTTACTTTGTGTCAGATTTTGAGAGCTTTGAAGTTGAACCTTGTGGACTTCTTCAAAGAGCTTCCTCAGTTTGTTGTCAAGATTGGCCCAACTTTAAGTAACATGTATGGTATTGATTGGGAGAAGAGGCTGGAGGTGAAGGAGTTGGAGGCTGATTTCGTTCACTTGAATCTTCTAAGCAAGTACTACAAGCGGGCATTCCAAGAATTTTTCAAGACAAATGAAGCTGATATGCAACCATCTGATGCAAAGACTTCCCGTTTTGGTTACATTTCAGATTACCACAAATTTGGCTGGTTGCTATTTTTGGCACTTCGTGTTCATGCATTCGGCAGGTTTAGGGACCTAGTCACCTGCACTAATGGCTTAGTCTCTGTGTTGGCTATCTTGATCATCCACATTCCAGTTCAGTTAAGGAAATTCACTTTTCTTGACTCATCTCTCTTCGAGAAGAAAACCAACAGAGGTATCAACTTGGTAGCGTCACTTTGCAACAAATATGAGTCATCTGAAGATGATGTGAAGAAAATGATGGAGAAAGCTAACGATCTAATTGTGTCTATTTTGGAGAAAAGTCTGCACTCAGCTTCAGAATGCAGAGCTGAAAAACTTGAAAACATTGATCCAGAGGGTTTGAGTTATTTTGAAAATCTGTTGGAAGACTCATCACTTCCATCTAATATAAGCAAGCTAGAAAAAGATTATGATGCTGCAGTTTGGAACAAGGATGATATAGATGAAAGAGTGTTTGTAAATGACAATGATAGCTTACTAGGTTCAGGGAGTCTCTCTGGAGGTGCTGTGAATATAAGTGGTACTAAGAGAAAGCTTGATGCCATGGCCTCACCAACAAAAACAATTACTAGTCCTTTGTCCCCGGCTAGATCTCCTGCATCACACACAAATGGGGCTCGTGGCAGTGTCAGCAGTAAAATAGCAGCCACACCTGTAAGCACTGCCATGACAACTGCTAAGTGGCTGCGTACTGTAGTTTCCCCACTTCCATCTAAACCATCACTACAGCTGGAGAAGTACTTCACGGCATGTGATAGGGATGTAAGTAGTGAGATTGTGCGCAGGGCTCATATAATTTTGGAGGCCATTTTTCCTAATAGTGCTCTTGGAGAGAGATGTGTTGCTGGGAACTTGCCAAATGCTAACCTGATGGACAACATATGGGCACAACAAAGAAGGCTGGAAGCTCTGAAGCTATACTACAGGGTCTTGGAGGCAATGTGCCTGGCAGAAGCTCAGTTGCTGCATGCAAATAATCTAACTTCTTTGCTAACCAATGAAAGATTCCACCGATGTATGCTTGCTTGCTCTGCTGAACTAGTCTTGGCCACTCATAAGACGGTGACAATGTTGTTTCCTGCTGTTCTAGAAAAAACAGGAATTACAGCTTTTGATCTTAGCAAGGTAATAGAAAGTTTCATACGACATGAAGATTCTCTACCAAGAGAGTTGAGAAGGCATTTAAATTCCTTGGAAGAGAGACTCTTGGAGAGCATGGTTTGGGAAAAGGGCTCATCTATGTATAACTCTTTGATAATTGCAAGACCAGCCCTGTCTGCAGAGATAAACCGCCATGGATTACTGGCAGAGCCTATGCCATCTTTAGATTCAATTGCTGTGCACAGTAATGTTCCCTCTGGAGGGTTACCACCATTGCCATGTTCACAGAAGCATGATATTGTAACAGGGCAAAATGGCGATATCAGGTCCCCAAAGAGAATTTCCACAGAGAATCGAAGCGCACTCGTAGAGCGCAACTCTTTCACATCACCAGTGAAGGATCGCTTGATAAATAATCTGAAGCAAAAGCTAACCCCTCCAGCATTGCAGTCTGCATTTGCAAGTCCAACAAGACTGAGCCCAGGGGGTGGAGGTGAAACATGTGCAGAAACAGGCATCAATATATTCTTCAGCAAGATTGTGAAGTTAGCAGCTGTCAGAATTAATGGCATGGTTGAAAGGCTTCAACTACATCAACATTCGAGGGAGAGTGTGTATTGTCTTTTCCACAAAATTCTGAATCAACAGACACAACTTTTCTTCAATCGGCACATTGACCAAATAATTCTCTGTTGTTTCTATGGAGTTGCGAAGGTTTCTCAACTAAACCTCACATTCAAGGAGATTATTTTGAACTATCGTAAGCAACCTTACTGTAAACCACACATTTTTCGCAGTGTGTTTGTTGACTGGTCCTCAGCATGCTGGAATGGAAGACAGGGGCAGGATCATGTTGACATTATTACATTTTACAATGAGATATTTATTCCTTCTGTAAAGCCTCTTCTGGTGGAGCTTGTTGCTGGAGGAACAAGTGTGAGAACCAGCCCAGCTCGTGAAACTAACAATGACAAAGATACTCCATGCCTAAGATCTCCAAAGATATCTACTTTCCCAAGCCTTCCTGACATGTCCCCAAGGAAAGTTTCTTCAGTACACCATGTTTACGTCTCTCCATTACGATCATCCAAGATGGATGCCCTTATCTCACATAGCTCCAAGAGTTACTATGCTTGTGTGGGTGAAAGCTCTCATGCTTATCGAAGCCCTTCAAAGGATCTGTCAGCCATTAACAACTGCTTGAATAGTGGTAACAACCATAGGCTCAAGGCAGTGCTGAATTCTGATGCTAATGCCAGGTTTGTAAGTGATTCTCTTGTGGCCACCAGTCTCTACCTTCAGAATGGCAGTTGTACCAGTCCATTGGTCTCACCCCTGAAAACAGAACAGCTGGATTCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54080.p1 GENE.R_Transcript_54080~~R_Transcript_54080.p1 ORF type:complete len:1015 (+),score=204.72,RB_A|PF01858.13|2.7e+03,RB_A|PF01858.13|8.7e-60,RB_B|PF01857.16|1.9e-40,DUF3452|PF11934.4|1.5e-35,DUF3452|PF11934.4|2.6e+03,DUF3452|PF11934.4|2.1e+03 R_Transcript_54080:165-3209(+)
MEDLKPANSIKENDSEIEARFNDLCKNQFCLDERILSDAIKLFMERRSILSTNILAIGSMKLEELERYLFAFVLYSVKRLGERNKGDASEGAKENGVTLCQILRALKLNLVDFFKELPQFVVKIGPTLSNMYGIDWEKRLEVKELEADFVHLNLLSKYYKRAFQEFFKTNEADMQPSDAKTSRFGYISDYHKFGWLLFLALRVHAFGRFRDLVTCTNGLVSVLAILIIHIPVQLRKFTFLDSSLFEKKTNRGINLVASLCNKYESSEDDVKKMMEKANDLIVSILEKSLHSASECRAEKLENIDPEGLSYFENLLEDSSLPSNISKLEKDYDAAVWNKDDIDERVFVNDNDSLLGSGSLSGGAVNISGTKRKLDAMASPTKTITSPLSPARSPASHTNGARGSVSSKIAATPVSTAMTTAKWLRTVVSPLPSKPSLQLEKYFTACDRDVSSEIVRRAHIILEAIFPNSALGERCVAGNLPNANLMDNIWAQQRRLEALKLYYRVLEAMCLAEAQLLHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLEKTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIIARPALSAEINRHGLLAEPMPSLDSIAVHSNVPSGGLPPLPCSQKHDIVTGQNGDIRSPKRISTENRSALVERNSFTSPVKDRLINNLKQKLTPPALQSAFASPTRLSPGGGGETCAETGINIFFSKIVKLAAVRINGMVERLQLHQHSRESVYCLFHKILNQQTQLFFNRHIDQIILCCFYGVAKVSQLNLTFKEIILNYRKQPYCKPHIFRSVFVDWSSACWNGRQGQDHVDIITFYNEIFIPSVKPLLVELVAGGTSVRTSPARETNNDKDTPCLRSPKISTFPSLPDMSPRKVSSVHHVYVSPLRSSKMDALISHSSKSYYACVGESSHAYRSPSKDLSAINNCLNSGNNHRLKAVLNSDANARFVSDSLVATSLYLQNGSCTSPLVSPLKTEQLDS*

Click here to download the sequence:
Link to NCBI Protein BLAST