Transcript Information: R_Transcript_54146.p1


Annotated TAIR IDAT3G55070.1
Annotated Gene NameLisH/CRA/RING-U-box domains-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20408377-20410887 | Forward length=418
E-Value9.1E-216
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.055076270822
Replicate 230.103129512524
Replicate 334.590093719491
Condition 2: 8 Hour
Replicate 131.025262613879
Replicate 236.055799434683
Replicate 341.041593491076
Condition 3: 24 Hour
Replicate 131.670709970748
Replicate 228.786984495733
Replicate 332.699703387654


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54146.p1 GENE.R_Transcript_54146~~R_Transcript_54146.p1 ORF type:5prime_partial len:498 (+),score=97.50,CLTH|PF10607.5|1e-37,zf-RING_UBOX|PF13445.2|3.8e-08 R_Transcript_54146:3-1496(+)
GACAATCACACCACAAGACACACCACCTCAACAAGAAGCAAGAGAAAAATAGAATCTCCCCTTGGACAAACCAAATACAACACCAAACCACAAACGACACCGTTTCCTTCCCCAAAACCACACTCATCCATTTCTTCTTCCTCAATCATCAATTCATCATCATCATCATCATCATCACCAACACCACCTTCTCCCCCAATTCTCCCCATCCAAACCATCCGATCTCAAACTCCTCCAATGGAAGTCGACCCTCTTCCAAATGGCAACTCCACCACAAACACCACCAACAACCCTTCATCCACTCAAACCCCACCATCAAAACTAACTCCAACTCCAACAACAAACCCCACAACACCCCACTTATCAGAATCACTCAAACTAGAACACCAGTTCTTGAGAGTCCCCTTTGAGCACTATAAGAAAACCATTCGTACCAACCACCGTGCCGTCGAAAAGGAGGTTTCTTCTGTCATTTCTGCTGTTGATTCAACTTCTCCTGACTTGTCCCCTGATGATGCTGTTACCCATCTCTCTTCTCTTGTTTCTAGGCTTCAAGGCCTCAAGAGAAAGTTGGAAGAGGGAAGCCGAACCGAGAACTTGCAAGCACAACGCTGTCGAGCTCGGTTAGATCATTTGGAATCTGCAGATGCGGACTTATCAGAATGGAGTAACACACGCTTGAAGCGGATTCTTGTGGACTATATGCTTCGTATGTCATATTATGAGAGTGCAGTAAAGTTGGCTGAAACCAGCAATATACAGGATCTTGTTGATATTGATGTGTTTCATGAAGCTAGAAGAGTAATTGAAGCTCTTCAAAATAAGGAGGTAGCTCCTGCATTAGCATGGTGTGCTGACAACAAGTCCAGGCTGAAGAAGTCAAAGAGTAAATTTGAATTTCAGCTAAGACTCCAAGAGTTCATAGAATTGGTAAGAGCTGATAATAACCTGCGTGCAATTCATTATGCTCGAAAGTACCTAGCACCTTGGGGAGCCACTCATATGAAAGAGTTGCAGAGAGTTATTGCGACACTTGCTTTTAAAAGCAGTACTGAATGTGCTACCTACAAGGTTCTTTTTGAACCCAAACAATGGGATTTCCTGGTGGACCAATTCAAGCAGGAATTCTGTAGGCTGTACGGCATGACCCTTGAACCTTTGCTAAATATCTATCTTCAGGCTGGGTTGTCTGCTTTAAAAACTCCTTTCTGCTATGAAGACGATTGTCCAAAAGATGATCCGTTGTCTCAGGAAAGCTTCCGTAAACTTGCAATGCCCCTACCATTCTCAAAGCAGCATCACTCTAAGCTTGTTTGCTACATAACAAAGGAACTAATGGATACAGAGAATCCACCAATGGTCTTACCAAATGGTTATGTCTACAGCACCAAGGCTCTTGAGGATATGGCACATAGAAACAATGGTAAAATTACTTGTCCAAGGACAGGTTTTGTGTGCAGTTATGCTGATCTTGCTAAGGCTTATATTTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54146.p1 GENE.R_Transcript_54146~~R_Transcript_54146.p1 ORF type:5prime_partial len:498 (+),score=97.50,CLTH|PF10607.5|1e-37,zf-RING_UBOX|PF13445.2|3.8e-08 R_Transcript_54146:3-1496(+)
DNHTTRHTTSTRSKRKIESPLGQTKYNTKPQTTPFPSPKPHSSISSSSIINSSSSSSSSPTPPSPPILPIQTIRSQTPPMEVDPLPNGNSTTNTTNNPSSTQTPPSKLTPTPTTNPTTPHLSESLKLEHQFLRVPFEHYKKTIRTNHRAVEKEVSSVISAVDSTSPDLSPDDAVTHLSSLVSRLQGLKRKLEEGSRTENLQAQRCRARLDHLESADADLSEWSNTRLKRILVDYMLRMSYYESAVKLAETSNIQDLVDIDVFHEARRVIEALQNKEVAPALAWCADNKSRLKKSKSKFEFQLRLQEFIELVRADNNLRAIHYARKYLAPWGATHMKELQRVIATLAFKSSTECATYKVLFEPKQWDFLVDQFKQEFCRLYGMTLEPLLNIYLQAGLSALKTPFCYEDDCPKDDPLSQESFRKLAMPLPFSKQHHSKLVCYITKELMDTENPPMVLPNGYVYSTKALEDMAHRNNGKITCPRTGFVCSYADLAKAYIS*

Click here to download the sequence:
Link to NCBI Protein BLAST