Transcript Information: R_Transcript_54289.p1


Annotated TAIR IDAT3G51320.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19049853-19051445 | Reverse length=530
E-Value2.3E-161
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3682299720694
Replicate 23.0507445049322
Replicate 33.6415839255422
Condition 2: 8 Hour
Replicate 13.34849435176
Replicate 22.905003452872
Replicate 35.5540825658962
Condition 3: 24 Hour
Replicate 17.3778936048006
Replicate 25.6174932900787
Replicate 36.5850188459725


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54289.p1 GENE.R_Transcript_54289~~R_Transcript_54289.p1 ORF type:complete len:585 (+),score=93.26,PPR|PF01535.16|0.15,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.0027,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.0051,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|0.016,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|2.2,PPR|PF01535.16|6.7,PPR|PF01535.16|63,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|0.031,PPR_2|PF13041.2|4.1e-08,PPR_2|PF13041.2|4.6e-06,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|18,PPR_2|PF13041.2|16,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|5.3e+03,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|6.6e+02,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|7.3e+02,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|6e+02,PPR_1|PF12854.3|24,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2.2e-06,PPR_1|PF12854.3|15,PPR_1|PF12854.3|24,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|64,PPR_1|PF12854.3|2.1e+02 R_Transcript_54289:289-2043(+)
ATGGCAAGAGTCTTAAAACGATGTTTCTATTGTCTAAAGATCCCTTCTTTCTCTTTCTCTTTTACTATATTTCCATTTCGTCGTTGCTATTCTTGCCCTAGTAGTCTCTCTTTCACTTATCAACTTGTGAGTTACTTGAATCAATGCTTAACAAAGCCCCACTTTTACCAAATCCATGCCCATTTGATCACGTCTAATCGACTTCAAAATCCTTTTCTTGGTAGTAAGTTACTCAAAGTTTCAACCTTGCTTGAAGATTTGGGTTACACTTTATTGGTTTTTAGGAGTTTGAATTTCCCAGATATTGTTTGCCTTAACACTGTTATTAAGGCTTACTCTAGTAGCTCTGTGCCCCACCAAGGTGTAGCCTTATACTTGGAAATGTTGAAATGTGGCGTTTCTCCTAATTCATTTACTTTCCCTCCTTTACTTGGTTGTTGTGCTAAAGTTGGTAGCTCTAGGACTGGTGAAATGTGTTATGGGCAAGCTATTAAGAATGGGTTTGACTGTGTGGTTGAGATACAGAACTCTTTGATTCATATGTATGCTTCTTGTGGACTTATTGAGTTTGCTTGGAATGTGTTTGATGCTATGCTAAGTAAGGATTTGGTGTCATGGAATTCTATTATTAGTGGGTTGGTGAAAATGGGTGATTTGAGGAGTGCACACAAACTGTTCGATGAAATGCCTGAGAGGAATGTGGTGTCTTGGAATGTTATGATGGCTGGGTACTTAGATGGGAACAATCCGGGATGTGCCCTGAAGCTTTTTAGAGAGACGGTGGGAAGAGGACTCGTAGGAGACAACACAACTATGGTTAGTGTGATTACTGCTTGTGGGAGGTCTGCTAGAGTGAAAGAGGGAGCATCGATACATGGGTTTCTTGTGAGGAGGTTATGGAATTTGAGTTTGATCTTGAACACAGCCCTGATTGATATGTATGGCAAATGCCAAAAGGTTGAGGTTGCGCGTAGTATTTTTGATAGGTTGCAGGAGAAAAATTTGGTGTGTTGGAATGTAATGATCTTGGGGCATTGTCTTCATGGAAATCCTGAAGATGGGCTTCATTTATTTGAAGACATGGTTTCTGGGACAAAGTTAGATAATGAAGGTGAACTTGTGAACTCAGGTGGGAGGGGAAGAGTGGTGCCTGATGAAATCACCTATGTTGGCGTTCTGTGTGCTTGTACTCGTGCAGGGATGTTGGCGAAAGGCAAAATCTATTTTAATCAGATGGTTAATTTGTTCTGTATAAAACCTAATTTTGCACATTACTGGTGCATGGCTAATCTCCTTGTGAGCAATGGGCTTGTGGATGAAGCGTTAGGAAGTCTTAGGAAAGCTAATGAGTTTGTTGGTGATATGTCGATAGAATCCTCTGTGTGGGCAAGTTTGCTTGGCTCATGCAGATTGCAAGGTGACACATCTCTACCAGAACAAGTTGCAAGAGCACTAATTGAAGTAGAGCCACAAAATGCAATGTGCTATGCACTACTCTATAATATGTATGCTGCTGCTAGTAAGTGGGAGGATGCTGCTGAAGTGAAGAACTTGATGAAGCAAAGAGTGTGCGGAAAAATGCCTGGTTCCAGTCTGGTCAACTTAATAGAAATTGTTCACGGTTTTAGGGTAGGAAACAGAAAGCAGTGTGGAACAGAGGTAGCCATGATGTTGGATGCATTGGTTGAGAGGCTGAATCTGTCAAATACTGATCAAAAGCAAGCACCAATACGCAAGACAGAATGTCAAACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54289.p1 GENE.R_Transcript_54289~~R_Transcript_54289.p1 ORF type:complete len:585 (+),score=93.26,PPR|PF01535.16|0.15,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.0027,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.0051,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|0.016,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|2.2,PPR|PF01535.16|6.7,PPR|PF01535.16|63,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|0.031,PPR_2|PF13041.2|4.1e-08,PPR_2|PF13041.2|4.6e-06,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|18,PPR_2|PF13041.2|16,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|5.3e+03,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|6.6e+02,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|7.3e+02,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|6e+02,PPR_1|PF12854.3|24,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|0.13,PPR_1|PF12854.3|2.2e-06,PPR_1|PF12854.3|15,PPR_1|PF12854.3|24,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|64,PPR_1|PF12854.3|2.1e+02 R_Transcript_54289:289-2043(+)
MARVLKRCFYCLKIPSFSFSFTIFPFRRCYSCPSSLSFTYQLVSYLNQCLTKPHFYQIHAHLITSNRLQNPFLGSKLLKVSTLLEDLGYTLLVFRSLNFPDIVCLNTVIKAYSSSSVPHQGVALYLEMLKCGVSPNSFTFPPLLGCCAKVGSSRTGEMCYGQAIKNGFDCVVEIQNSLIHMYASCGLIEFAWNVFDAMLSKDLVSWNSIISGLVKMGDLRSAHKLFDEMPERNVVSWNVMMAGYLDGNNPGCALKLFRETVGRGLVGDNTTMVSVITACGRSARVKEGASIHGFLVRRLWNLSLILNTALIDMYGKCQKVEVARSIFDRLQEKNLVCWNVMILGHCLHGNPEDGLHLFEDMVSGTKLDNEGELVNSGGRGRVVPDEITYVGVLCACTRAGMLAKGKIYFNQMVNLFCIKPNFAHYWCMANLLVSNGLVDEALGSLRKANEFVGDMSIESSVWASLLGSCRLQGDTSLPEQVARALIEVEPQNAMCYALLYNMYAAASKWEDAAEVKNLMKQRVCGKMPGSSLVNLIEIVHGFRVGNRKQCGTEVAMMLDALVERLNLSNTDQKQAPIRKTECQT*

Click here to download the sequence:
Link to NCBI Protein BLAST