Transcript Information: R_Transcript_54323.p1


Annotated TAIR IDAT4G34350.1
Annotated Gene Name4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Annotated Gene Symbol(s)CLB6, ISPH, HDR
Annotation TypeOrtholog
Chromosome Positionchr4:16428681-16431038 | Reverse length=466
E-Value2.9E-271
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 148.431701020609
Replicate 235.464339358621
Replicate 338.931829233797
Condition 2: 8 Hour
Replicate 138.837874023467
Replicate 247.728268803875
Replicate 350.679601921206
Condition 3: 24 Hour
Replicate 143.745233520016
Replicate 236.001966718442
Replicate 342.441914760517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54323.p1 GENE.R_Transcript_54323~~R_Transcript_54323.p1 ORF type:complete len:476 (+),score=112.26,LYTB|PF02401.14|9.1e-84 R_Transcript_54323:153-1580(+)
ATGGCGATCGCTCCTCCTCATATGTGCCGTATCTTCACCTTCACTGAGCTTCCATTACCGGAAACTCCTCATGGCCGTTCGATCAGATTCTCTCCTTTTTACCGGAGGTCTCATCTGTCTGTCCGATGTGCTGCTGCTGGTGAATCGTCTTCTTCTTCTGTTGCTGCTGCTGTTGATTCTGAGTTTGATGCCAAGACTTTCCGCCATAACTTGACCAGAAGCAAGAATTACAATCGTAAAGGGTTTGGCCATAAGGAAGAGACTCTCGAGCTCATGAATCGCGAGTATACTAGTGATATTATAAAGACTCTGAAGGAAAATGGCAACACATATACATGGGGGAATGTGACAGTGAAGTTGGCTGAAGCATATGGGTTCTGCTGGGGTGTGGAGCGAGCAGTTCAGATTGCATATGAAGCTAGGAAGCAATTCCCCAGTGAGAGAATCTGGATCACTAATGAAATCATTCATAACCCGACTGTCAACAAGCGCCTGGAAGAAATGGAAGTTCAGAACATCCCTATTGAGGACGGAAGGAAGCAATTTGAACTGGTTGACAAAGATGATGTTGTGATTTTGCCGGCTTTTGGAGCTGCTGTGGAAGAAATGAAGACTTTGAGTGATAAAAGTGTACAAATAGTAGACACAACTTGCCCTTGGGTGTCAAAGGTATGGAACACTGTGGAGAAGCACAAAAAGGGAGAGTATACTTCTATTATTCACGGGAAATATGCTCATGAAGAGACCATTGCTACCGCATCTTTTGCTGGGAAGTATTTAATTGTGAAGGATATGAAAGAGGCAACTTATGTGTGTGATTACATTCTTGGTGGACAACTTGACGGTTCTAGCTCAACCAGAGAGGCATTTTTAGAGAAATTCAAGAATGCTATGTCAGAGGGGTTTGATCCTGACAAAGACCTTATAAAAGTTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGAGATTGGAAAGCTGCTTGAGAGAACTATGATGCGCAAGTATGGAATAGAAAATGTCGACAACCACTTCCAAAGTTTCAACACAATTTGTGATGCTACTCAAGAGCGACAAGATGCAATGTATAAGCTGGTTGATGAACACGTAGACCTTATGTTGGTGGTTGGAGGCTGGAATTCTAGTAACACCTCTCACTTGCAAGAGATAGCCGAGGACCGTGGGATCCCCTCGTACTGGATTGACAGTGAAGTTAGAATAGGCCCTGGAAACAGAATTAGTTACAAGTTGAAACATGGGGAGCTAGTTGAGAAAGAAAATTTCCTACCACAAGGTCATATCACAATAGGAGTAACTTCCGGTGCTTCTACCCCAGACAAGGTGGTGGAAGACGCCCTGATCAAGGTTTTTGACATCAAGCGAGAAGAGTTATTGCAACATGAAGCAGTAGCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54323.p1 GENE.R_Transcript_54323~~R_Transcript_54323.p1 ORF type:complete len:476 (+),score=112.26,LYTB|PF02401.14|9.1e-84 R_Transcript_54323:153-1580(+)
MAIAPPHMCRIFTFTELPLPETPHGRSIRFSPFYRRSHLSVRCAAAGESSSSSVAAAVDSEFDAKTFRHNLTRSKNYNRKGFGHKEETLELMNREYTSDIIKTLKENGNTYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNKRLEEMEVQNIPIEDGRKQFELVDKDDVVILPAFGAAVEEMKTLSDKSVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYAHEETIATASFAGKYLIVKDMKEATYVCDYILGGQLDGSSSTREAFLEKFKNAMSEGFDPDKDLIKVGIANQTTMLKGETEEIGKLLERTMMRKYGIENVDNHFQSFNTICDATQERQDAMYKLVDEHVDLMLVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEVRIGPGNRISYKLKHGELVEKENFLPQGHITIGVTSGASTPDKVVEDALIKVFDIKREELLQHEAVAA*

Click here to download the sequence:
Link to NCBI Protein BLAST