Transcript Information: R_Transcript_54399.p1


Annotated TAIR IDAT1G59077.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1); Has 63 Blast hits to 58 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:21810644-21813023 | Reverse length=665
E-Value5E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2016209974587
Replicate 22.2845715478873
Replicate 34.5101348634911
Condition 2: 8 Hour
Replicate 14.6941813629434
Replicate 24.0550821991787
Replicate 35.266788573791
Condition 3: 24 Hour
Replicate 14.8770471312739
Replicate 25.1424178760413
Replicate 35.443574222648


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54399.p1 GENE.R_Transcript_54399~~R_Transcript_54399.p1 ORF type:internal len:193 (-),score=29.92 R_Transcript_54399:3-578(-)
CAATCCACTTCCTGTTCACGATTTCCGACTTCTTCAATGCCTCTTTTTGCCTCTTCCAGTGTGTGTGGAATTGAAGAAGTTGGAAATCGTGAACAGGAAGTGGATTGCATGAATACAGAAGAAGTGCATAAAGTGACGATTCTAAACCTATCTGAAGATGCCTCTCAGCATTCAAACACAATCCAGGTTCATGACAAGCTTGAAGGAGGCGAGCAAACTGAAAGACTGACTGATGGGGAGAAGATAAAGAATCAAAACATTGATATGTCAACTGCTTCTTTCCAGCCAATATTGCCTTGGATCAATGGTGATGGAACCATTAATGGAATCGTTTACAGGGGGCTTACACGCCGTATACTTGGGATTGTTATTCAAAATCCTGGGATACTCGAGGACGATATTCTTAGCCAAATGGAAGTACTAAATCCACAGAGTTGTAGACAGCTGCTGGAGTTGTTGGTGATGGAAAAGCACCTTATTGTGCGAAAAATGATCCAAGGCATTTCCTCTGGGCCTCCTACCTTGCTAAAGAGCCTCATGAACAGCCAATTAAAGGAACCTAAATTTATCTGCCGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54399.p1 GENE.R_Transcript_54399~~R_Transcript_54399.p1 ORF type:internal len:193 (-),score=29.92 R_Transcript_54399:3-578(-)
QSTSCSRFPTSSMPLFASSSVCGIEEVGNREQEVDCMNTEEVHKVTILNLSEDASQHSNTIQVHDKLEGGEQTERLTDGEKIKNQNIDMSTASFQPILPWINGDGTINGIVYRGLTRRILGIVIQNPGILEDDILSQMEVLNPQSCRQLLELLVMEKHLIVRKMIQGISSGPPTLLKSLMNSQLKEPKFICR

Click here to download the sequence:
Link to NCBI Protein BLAST