Transcript Information: R_Transcript_54420.p1


Annotated TAIR IDAT4G25500.1
Annotated Gene Namearginine/serine-rich splicing factor 35
Annotated Gene Symbol(s)ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40
Annotation TypeOrtholog
Chromosome Positionchr4:13025168-13027243 | Forward length=350
E-Value6.3E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.393771014389
Replicate 27.4799320233062
Replicate 38.8763608185091
Condition 2: 8 Hour
Replicate 17.9579061078547
Replicate 212.857507058682
Replicate 315.655764160084
Condition 3: 24 Hour
Replicate 116.500923944912
Replicate 211.854701653685
Replicate 317.646961903811


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54420.p1 GENE.R_Transcript_54420~~R_Transcript_54420.p1 ORF type:complete len:160 (+),score=24.13,RRM_1|PF00076.18|1.4e-14,RRM_1|PF00076.18|4.6e-12,RRM_6|PF14259.2|2.4e-11,RRM_6|PF14259.2|8.2e-10,RRM_5|PF13893.2|2e-06,RRM_5|PF13893.2|7.2e-07,Nup35_RRM_2|PF14605.2|1.8e+02,Nup35_RRM_2|PF14605.2|9.8e-06 R_Transcript_54420:654-1133(+)
ATGAGGGCCATCTTTTGTGGCAACTTGGAATTTGATGCGCGCCATTCTGAGGTTGAGCGTCTTTTCAAAAGATATGGCAGGGTTGAAAGGGTCGATATGAAGTCTGGATTTGCATTTGTCTATATGGAAGATCAAAGAGATGCTGATGATGCTATCAGAAAACTAGACCGGTACGAGTTTGGCAGGAGGGGACGCCGTCTTCGTGTTGAGTGGACTAAGCAAGAAAGAGACAACCGAAGATCAGGTGGTGGACGAAAGCCTGCAGCTAATGACAGGCCCTCTAAAACCTTGTTTGTCATTAATTTTGACCCAATTTACACAAAATCCAAGGACTTGGAAAGACACTTTGATCCATATGGGAAGATAGTTAACATACGGATCCGGAGAAACTTTGCATTCATTCAGTTTGAAACCCAGGAGGATGCAACCCGGGCATTCGAAGCGACGAATATGAGGTTTGGTCAAATTCCAGTACTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54420.p1 GENE.R_Transcript_54420~~R_Transcript_54420.p1 ORF type:complete len:160 (+),score=24.13,RRM_1|PF00076.18|1.4e-14,RRM_1|PF00076.18|4.6e-12,RRM_6|PF14259.2|2.4e-11,RRM_6|PF14259.2|8.2e-10,RRM_5|PF13893.2|2e-06,RRM_5|PF13893.2|7.2e-07,Nup35_RRM_2|PF14605.2|1.8e+02,Nup35_RRM_2|PF14605.2|9.8e-06 R_Transcript_54420:654-1133(+)
MRAIFCGNLEFDARHSEVERLFKRYGRVERVDMKSGFAFVYMEDQRDADDAIRKLDRYEFGRRGRRLRVEWTKQERDNRRSGGGRKPAANDRPSKTLFVINFDPIYTKSKDLERHFDPYGKIVNIRIRRNFAFIQFETQEDATRAFEATNMRFGQIPVL*

Click here to download the sequence:
Link to NCBI Protein BLAST