Transcript Information: R_Transcript_54565.p1


Annotated TAIR IDAT1G51580.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19125612-19128102 | Forward length=621
E-Value6E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.793945030355
Replicate 29.3963035390722
Replicate 312.889213866057
Condition 2: 8 Hour
Replicate 112.421400877028
Replicate 215.841674307312
Replicate 316.696306561901
Condition 3: 24 Hour
Replicate 117.268554707719
Replicate 213.342467113104
Replicate 317.516545004529


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54565.p1 GENE.R_Transcript_54565~~R_Transcript_54565.p1 ORF type:complete len:686 (+),score=167.30,KH_1|PF00013.25|2.8e-14,KH_1|PF00013.25|1.4e-12,KH_1|PF00013.25|1.3e-10,KH_1|PF00013.25|6.6e-12,KH_1|PF00013.25|4.2e-12,KH_3|PF13014.2|2.9e-11,KH_3|PF13014.2|1.2e-09,KH_3|PF13014.2|1.4e-07,KH_3|PF13014.2|1.7e-08,KH_3|PF13014.2|0.00038,KH_2|PF07650.13|0.051,KH_2|PF07650.13|0.003,KH_2|PF07650.13|0.072,KH_2|PF07650.13|0.017,KH_2|PF07650.13|9.4e+02,KH_4|PF13083.2|0.92,KH_4|PF13083.2|6.5,KH_4|PF13083.2|0.029,KH_4|PF13083.2|1.2,KH_5|PF13184.2|0.29,KH_5|PF13184.2|6.5,KH_5|PF13184.2|2.4,KH_5|PF13184.2|12 R_Transcript_54565:287-2344(+)
ATGTCATCTTTAACACCTTCTAAGAGACACCATAATAGAAACTCTAAGGAGTCAAATGGGAAAAAGTTTCAAAAATCAGCTAGCCGTGACTCACAAAAACAGCCTAAGAAAAACTCGGCGGGGAGTGCTGTTTTTCGTGTTCTTTATCCGTCCTCAAAAATTGGAAGTGTAATTGGAAAAGGGGGTAATATCATATCACAAATACGGCAAGAAACCGGTGCTAAGGTTAGAGTTGATGATCCTATTCCTGGATGTGATGAGAGGGTGATCTTTATTATGGGTCCTGACAAGAATGCTGAGAGCATCAATGAACAAATGAAAGGTGACAATGGGAAATCTAATTCAGAAGATCACAATGAGATTAATGTGGAGAAGGAAGCTCTTCTAAATGCTGAAGATACACATCCTGATAAAGCAAAATCCTCTATTCAGAAGGCTTTGTTACTTGTCTTTGAAAAATTTCTTGAAGGAGAAGAGGAGACTAAAGGTAGTAATGAAGAAAATAATGGATCTGTAACAGTCAATTTGAGGTTGCTTGTGCTTTCCAGTCAAGTGGGCAGCCTTTTGGGGAAAGGCGGCTCTGCCATCAAACAAATGTCTGCTAAAAGTGGTGCCCAGATTCAAGTTCTTCCAAGAGACAATCTCCCTCAGTGTGCCTCCTCTGCTGACGAAGTTATCCAGATCAGTGGTGTAGCAGATGCCGTAAAGGAAGCAATCAAGTCTTTTTCAGATCAGATTATGGAAAATCCACCTTGTGATCATGATTCAGTTCCTTCGAATCCCTCTGGATCCTCATCTCATTCACACAGCCATCCTGTTCCAAGGCTCGAGTCCAACTCCTTCAGATCCTTGCCCCCTCAGCGGGCTTCTTTTAGTGGTGGATTTCGTGATAGTGGCGATTTTCATTCAAGTGTTCCTCCATTGTTTCCCAATTTCCGTGAGAACTTCAAACCTACTCGAATGGATGTTTCTGATGCCTTAACCTTTCGGTTAATTTGCCCTGATGAGAGGGTAGGTGGTGTCATTGGGAAAGGTGGGACTATAGTGAAGTCTCTCCAGCATGAAACAGGGTGTGAGATTAAAGTTCTTGAAGGCACTTCTGATGGAGAGGAACGTATAATAGCTGTGTCTGGCCCAGCGCACCCAGATGATAGGATCTCTCCCATACAGGACGCAGTTCTTCGTGTACAGCACCGGATAGCCAAAGCAATACCTGATAGCAAGGAAAAGGATGTAACTGCCAAGCTTCTTATCTCCTCCAATCAAATTGGCTGCCTTCTTGGCAAGGGGGGCTCTATAATTGCTGAGATGCGGAAGGCAACAGGAGCTTATATTCGTATATTGGGAAAGGATCAGATCCCAAAGTGTGCATTGGAAAATGATGAAGTAGTTCAGGTGAATGGAGAACTAGAGGTTGTCCAAGAGGCAGTTCTACAGATAACCACTAGACTACAGCATCATCTCTTCCGTGATGTGTTTCCTTCTGTTAATCATCCTGCAAACCCTGCATTCTCGGATCAAGTGCCCCCTCTTCCATCATTAATGGGAAGAAGAGAACTCTCTCCTCCTGGAATGTTTCCCAAATTAGGTCCATCATTCAGAAACTTTGATTCCATTGGTGGTCCCCCACATGGCGGATTTCATCCACATGATGATCATCCTCCATTTATGCATGATATCCGTAGACAGGGAGTTGCTCCCTTTCCTGAAAGACCCTGGCATCCTCAGTTAATTGAAGGTGGTTCAATGGGTTTGTTGGGCTATGCTGGAGCCCCACAGAGGCGGATGGCTGGATTTGGAGGCGGAAGCCAAGAGGCGGTGATCACAAATACAACTGTGGAAGTAGTAGTCCCTAGTTCTATTGTACCGTCAATATATGGAGAAAATGGTGGATGCTTGAGACAAATTCGCCAGATATCTGATGCAAGAATTACAATAACTGATCCAAAGCCTGGTACCCCTGAAACTATCATCATCATCTCTGGCACACCTGAGCAGACTCACGCGGCACAGAGTCTTATTCAAGCGTTTGTGATGATTGAAAATGAATCTTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54565.p1 GENE.R_Transcript_54565~~R_Transcript_54565.p1 ORF type:complete len:686 (+),score=167.30,KH_1|PF00013.25|2.8e-14,KH_1|PF00013.25|1.4e-12,KH_1|PF00013.25|1.3e-10,KH_1|PF00013.25|6.6e-12,KH_1|PF00013.25|4.2e-12,KH_3|PF13014.2|2.9e-11,KH_3|PF13014.2|1.2e-09,KH_3|PF13014.2|1.4e-07,KH_3|PF13014.2|1.7e-08,KH_3|PF13014.2|0.00038,KH_2|PF07650.13|0.051,KH_2|PF07650.13|0.003,KH_2|PF07650.13|0.072,KH_2|PF07650.13|0.017,KH_2|PF07650.13|9.4e+02,KH_4|PF13083.2|0.92,KH_4|PF13083.2|6.5,KH_4|PF13083.2|0.029,KH_4|PF13083.2|1.2,KH_5|PF13184.2|0.29,KH_5|PF13184.2|6.5,KH_5|PF13184.2|2.4,KH_5|PF13184.2|12 R_Transcript_54565:287-2344(+)
MSSLTPSKRHHNRNSKESNGKKFQKSASRDSQKQPKKNSAGSAVFRVLYPSSKIGSVIGKGGNIISQIRQETGAKVRVDDPIPGCDERVIFIMGPDKNAESINEQMKGDNGKSNSEDHNEINVEKEALLNAEDTHPDKAKSSIQKALLLVFEKFLEGEEETKGSNEENNGSVTVNLRLLVLSSQVGSLLGKGGSAIKQMSAKSGAQIQVLPRDNLPQCASSADEVIQISGVADAVKEAIKSFSDQIMENPPCDHDSVPSNPSGSSSHSHSHPVPRLESNSFRSLPPQRASFSGGFRDSGDFHSSVPPLFPNFRENFKPTRMDVSDALTFRLICPDERVGGVIGKGGTIVKSLQHETGCEIKVLEGTSDGEERIIAVSGPAHPDDRISPIQDAVLRVQHRIAKAIPDSKEKDVTAKLLISSNQIGCLLGKGGSIIAEMRKATGAYIRILGKDQIPKCALENDEVVQVNGELEVVQEAVLQITTRLQHHLFRDVFPSVNHPANPAFSDQVPPLPSLMGRRELSPPGMFPKLGPSFRNFDSIGGPPHGGFHPHDDHPPFMHDIRRQGVAPFPERPWHPQLIEGGSMGLLGYAGAPQRRMAGFGGGSQEAVITNTTVEVVVPSSIVPSIYGENGGCLRQIRQISDARITITDPKPGTPETIIIISGTPEQTHAAQSLIQAFVMIENESS*

Click here to download the sequence:
Link to NCBI Protein BLAST