Transcript Information: R_Transcript_54627.p1


Annotated TAIR IDAT5G07950.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2540530-2542047 | Reverse length=303
E-Value2E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2889471095787
Replicate 23.5567503437445
Replicate 34.8817637499997
Condition 2: 8 Hour
Replicate 14.2816813022505
Replicate 26.109530557701
Replicate 33.868376033853
Condition 3: 24 Hour
Replicate 13.5126699583372
Replicate 24.3387394538841
Replicate 33.3489384220389


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54627.p1 GENE.R_Transcript_54627~~R_Transcript_54627.p1 ORF type:5prime_partial len:183 (+),score=51.20 R_Transcript_54627:2-550(+)
GTGGCTGTTGTTGTTGACATGATGAATTCGAGCAGATCTATGAGGTGTTTCTTGAAAGCAACTAGCGGGAGCCCCCTTGTACAATTTTCTAGCAGCTCAGATGATAGTAATGACACTGGTGATGGCGGAGGGATTCCAGTCTTCACATTCTTGTCTGTCTCTGCATTTGAGATGTTGGCTGAGGAGCTTGTGGAAATGTTCAAAAAGGAGCTTGCTTTGAAGCGTTTGCTTGTAGTTGAGCTTCTCTCGGTCAGTTGTCAAAAACTTGAACAACATAATACCCTGTCTTGGGCAGACGAGCTTTATAGTGGAGAAAGTGATCAGTTGAAGATATGCAACTTGTATTCCAAAGAGGGTCCTGAACCAGTTCTACCAAGAATAAATGGGTTGAGGCCTGAAACTTCTGCTGTGGAATCTGAAAAACAGCCTAACCATGAAGTTCTGAAGGTCTATCTAACAACATGGCTTGTAGAAGTGAATGTAGACTCAAACAGGGTGGAAGAAATATTTGCCAATGCTGGTGAGGAAATGCGTGTTAGCTTCTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54627.p1 GENE.R_Transcript_54627~~R_Transcript_54627.p1 ORF type:5prime_partial len:183 (+),score=51.20 R_Transcript_54627:2-550(+)
VAVVVDMMNSSRSMRCFLKATSGSPLVQFSSSSDDSNDTGDGGGIPVFTFLSVSAFEMLAEELVEMFKKELALKRLLVVELLSVSCQKLEQHNTLSWADELYSGESDQLKICNLYSKEGPEPVLPRINGLRPETSAVESEKQPNHEVLKVYLTTWLVEVNVDSNRVEEIFANAGEEMRVSFS*

Click here to download the sequence:
Link to NCBI Protein BLAST