Transcript Information: R_Transcript_54695.p1


Annotated TAIR IDAT2G06040.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:2352333-2355419 | Reverse length=762
E-Value1E-167
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3009850525487
Replicate 23.0167098299279
Replicate 33.4228458477009
Condition 2: 8 Hour
Replicate 13.3210713376723
Replicate 23.0585574012656
Replicate 34.7987016582632
Condition 3: 24 Hour
Replicate 15.040162276427
Replicate 24.2589465443873
Replicate 35.1322893748587


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54695.p1 GENE.R_Transcript_54695~~R_Transcript_54695.p1 ORF type:5prime_partial len:870 (+),score=170.64,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|17,LRR_4|PF12799.3|5.1,LRR_4|PF12799.3|0.89,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|0.037,LRR_4|PF12799.3|0.57 R_Transcript_54695:2-2611(+)
AAAAAAATAATAATTAGAAAAAAAAAACGAACAGTTTGCAGTCTCATACATGGACATTCTCCCCACCATAACCATTTCTTCTCCTTTCTCTCTCCTCGTTTCTCTCTCTTCCTTTCACCAATGCCGGTTCTAATGTCCAGTCAAGTTCCCTCACCACCACCACCACCAAATTCCTCATCTTCCAAAGCCCTGAAATTAGGGTTTATCGAACCGCCTTCAACTCCTGCTAAAAGTACTGAGCCGGTGAATTCAACCGTGTTAGTCTCTGACTCGCCGCCGATTCCTGGTCCAACTCGTCGGAGAAGTCTCCGGCTTTTGAAAAAATCGAATTCCACCAAAAATATGTCCGACTTTTCGTCTCCCGCTCGTAAACGCGCCAGAAAGAACGAGGTTCTTGAAAATGTGAACGAAAATGGAGGTCATGGTGATGGTAATGTTAAATTTGAAGTACTTAATGTTGAAGTAAAAGTGGCGGATGAGAAGGAATTTAGTTCTGTATGTCAGGTTTCAGTCGATGATTGTAGTGTTAGGGTTTATGATGTAAAGGTAAATTTTGAAGTGCCTTTTGGTTTTGAAGTTGAGAATGAGAAGGAATTTAATTCTTTAGGTCAGGTTTTAGCCGATGATTATGATATTAGGGTTTCTGATTCTGAGGATGAAAACTCTGAGTTCAAAGTGCGTAGAGTAATTAAGGGGATGGAGGTTAAAACAGAAGGTAAAGGAAAAGGTGTTATGATTGAAGAGGAAAAAAATGAGGATGTTGTTAAAGTAAGTAGTGCAGCAAGAAGGTTTACTAGAGAAGAGAAGGGGAAAGGTATACTGATAAATGATGATTGTGTTTTGAATACTGATGACTTTGATATGTTGATTTTGAAACTTGGGTATAATGATTTGCTTGCTAATAATAATAATAATAACAACAATAATTACGGGGGTTTAGGTTCTGATGTTGATGGTATACAAGAGAACTTAGGGTTTGATGATGTGTTTGTTGGTAACAATGGGGATGTTGTGGGCGGTTTAGAGTCTGATGATGTTGGTGGTGTACAACAGAATGTGGGGTTGCATAATGATGAAGTGATGAATAGGCCTAATACTGTAATGAACCGTTTCAAGGAGATAGCGAGACGAAACGCGTTTAGGTTCGCCCATTTTAATGCCAGAGAGGAAGAAGGGGGTCATGGTGATGTGGAGGGTGAAGGGGAAGTGAGGGTGGAAGAGCCAGCTGAGGATTGGCCCGGCCCGTTTTCGACTGCCATGAAGATTATAAAGGATAGGGAGAAGAGCTTGGGTGGTCAGGTGAAAAAGGGGTTTTCAGAGAAAGGGGGGAAGACACCGTTGATTTCGTGGACTCCTAGGAAAGAAAGGGACTCTGAGAGGGTGAAGCGAGCAGTGCCTCCTTTGCAAGAATTGTGTATGAAAATACTTGTGAAGAATGTTGATGCTGTCGCTTCTCTTAACTATGTTCCGGATGTTTTGAGGCATAGGCTCAGTCAGATGCTTTGTGATTCTAGGAGGATAAATGGGCATTTCTTTAGTCTTTTGGTGGCTGGGTCTCCTTCGGAGATACGTATTGCAGACTGTTCGTGGCTTGATGAGGACAAGTTTGAGAAGTCATTTGAGGGTTGCGACACCAGCAACTTGACGGTTCTACAACTTGATCTGTGTGGGCACTGTATGTCAGACATTTCACTGGCTAAAGCCTTTGTACCAAAAGGGTTGCCTGCTTTGACTACAGTTTCTTTGAAAGGTGCTTGTCGTATTTCAGATGTCGGATTAGGTGCACTTGTTAAATGTGCCCCTGCCTTGAGATCTCTAAATCTGAGTCAATGCTCCCTTCTGACTGATACTGGCATTGCCGGGATTGCTGATTTACTGGGGTCCAATTTGCGAGAACTTTATTTGGATGAGTGTGAAAGTTTAGATGCAATGCGTATTCTTCCAGCACTCAAGGGACTAAGACATTTGGAAGTGCTGTCTCTCAAAGGGGTAGGCAGCGTCTCAGACAAATTTATTGTAGAGCTCATAGGTTCAAATGGTCAGAATATGAAGGAGCTACTTTTGGCTAACTGTGGAAACTTGACTGATTCTTCTTTGAAAGTCATTGGTGAAACATGTTCTCAACTATGTGTCCTCGATCTCAGCCATCTGAGCAAGTTGACTGATATTGGCATGGCTCATGTCGCAAATGGCTGCCGTGCACTCCAAGATCTAAAACTCTGCCGTAGTGCATTCAGCGATGGTGCTATTGCTGCCTTCCTTGAAACCTGTGGAGAATCTTTGAGAGAACTATCTCTTAATAACATAATGAAGGTTGGCCAGAATACCACAATTTCAATTGCTAAACGTTGCAAAAATCTAGAGAGCTTGGATCTCTCATGGTGCCGCAGTCTAACAGATGAAGCACTGGGATTGATTGCAGATAGTTGTTTGTCCCTGAGAGTGCTCAAACTTTTTGGTTGTACGCAGGTTACAAAAACGTTTTTGGATGGCCATTCAAATCCGCACCTACAAGTAATTGGGTTGAAGCTGACTCCCATTCTAGAACACATCAAGAGGCCTGATTTCCGACAAGGCCCCTTGCAGTATTCTGCAGTGCCATATCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54695.p1 GENE.R_Transcript_54695~~R_Transcript_54695.p1 ORF type:5prime_partial len:870 (+),score=170.64,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|17,LRR_4|PF12799.3|5.1,LRR_4|PF12799.3|0.89,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|0.037,LRR_4|PF12799.3|0.57 R_Transcript_54695:2-2611(+)
KKIIIRKKKRTVCSLIHGHSPHHNHFFSFLSPRFSLFLSPMPVLMSSQVPSPPPPPNSSSSKALKLGFIEPPSTPAKSTEPVNSTVLVSDSPPIPGPTRRRSLRLLKKSNSTKNMSDFSSPARKRARKNEVLENVNENGGHGDGNVKFEVLNVEVKVADEKEFSSVCQVSVDDCSVRVYDVKVNFEVPFGFEVENEKEFNSLGQVLADDYDIRVSDSEDENSEFKVRRVIKGMEVKTEGKGKGVMIEEEKNEDVVKVSSAARRFTREEKGKGILINDDCVLNTDDFDMLILKLGYNDLLANNNNNNNNNYGGLGSDVDGIQENLGFDDVFVGNNGDVVGGLESDDVGGVQQNVGLHNDEVMNRPNTVMNRFKEIARRNAFRFAHFNAREEEGGHGDVEGEGEVRVEEPAEDWPGPFSTAMKIIKDREKSLGGQVKKGFSEKGGKTPLISWTPRKERDSERVKRAVPPLQELCMKILVKNVDAVASLNYVPDVLRHRLSQMLCDSRRINGHFFSLLVAGSPSEIRIADCSWLDEDKFEKSFEGCDTSNLTVLQLDLCGHCMSDISLAKAFVPKGLPALTTVSLKGACRISDVGLGALVKCAPALRSLNLSQCSLLTDTGIAGIADLLGSNLRELYLDECESLDAMRILPALKGLRHLEVLSLKGVGSVSDKFIVELIGSNGQNMKELLLANCGNLTDSSLKVIGETCSQLCVLDLSHLSKLTDIGMAHVANGCRALQDLKLCRSAFSDGAIAAFLETCGESLRELSLNNIMKVGQNTTISIAKRCKNLESLDLSWCRSLTDEALGLIADSCLSLRVLKLFGCTQVTKTFLDGHSNPHLQVIGLKLTPILEHIKRPDFRQGPLQYSAVPYL*

Click here to download the sequence:
Link to NCBI Protein BLAST