Transcript Information: R_Transcript_54782.p1


Annotated TAIR IDAT5G19420.2
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6547945-6552981 | Reverse length=1139
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7789940248973
Replicate 23.5249263472617
Replicate 34.932472694062
Condition 2: 8 Hour
Replicate 14.6916347070452
Replicate 25.0801638489555
Replicate 37.2043345071791
Condition 3: 24 Hour
Replicate 17.5199386813374
Replicate 25.3729508428687
Replicate 38.1280071236927


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54782.p1 GENE.R_Transcript_54782~~R_Transcript_54782.p1 ORF type:complete len:1096 (+),score=228.52,RCC1|PF00415.14|0.15,RCC1|PF00415.14|5.2e-11,RCC1|PF00415.14|0.00018,RCC1|PF00415.14|2.6e-11,RCC1|PF00415.14|1.8e-13,RCC1|PF00415.14|2e-07,RCC1|PF00415.14|3.3e-13,BRX|PF08381.7|2.1e+03,BRX|PF08381.7|2.7e-28,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0011,RCC1_2|PF13540.2|0.0001,RCC1_2|PF13540.2|0.013,RCC1_2|PF13540.2|0.53,RCC1_2|PF13540.2|0.002,RCC1_2|PF13540.2|4.8e-05,RCC1_2|PF13540.2|1.7e+02,BRX_N|PF13713.2|1.5e-17,FYVE|PF01363.17|7.4e-14,BRX_assoc|PF16627.1|1.8e-07,PH_12|PF16457.1|1.8e-06,PH_12|PF16457.1|3.9e+03 R_Transcript_54782:537-3824(+)
ATGAATGCCGATCAAGCTAGGGCTGGTCCGGTCGAGAGAGATATCGAGTTGGCAATCACTGCTCTCAAGAAGGGTACAAATCTGCTCAAATATGGGCGTAGAGGGAAGCCCAAATTTTGTCCATTCAGATTGTCTAATGATGAATCTCTTCTAGTATGGTTCTCAGGAAATGAAGAGAAACATTTAAAACTTAGTCATGTTTCCAGAATTATTCCTGGGCAACGCACTCCAATATTTCAAAGACACCCTCGACCAGAGAAGGAATACCAGTCATTTTCTCTAATATACAATGACAGGTCTTTAGATCTGATTTGCAAAGATAAAGATGAAGCTGAAGTCTGGTTCACTGGTCTCAAAGCTCTAATATCACGCTATCATCGTCGAGGAAGAGCAGATCCAAGAAGTGGAATATCCTCTGAAGCAAATAGTCCAAAAGCTCAAACCCAGAGGAGCTCTCCCTTGAGCTCTCCATTCGGGAGTGGTGATGGTTCACAAAAGGATGGAGCAGATCCCCTGTATGCTTCATATGAAAGCCCACAAAAAATTGGCTTGGAGAAGGCACTCTCTGATGTAATCTTGTATACGATACCTTCCAAAAGTTTTATACCCCCAGAATCAGTCTCCAGCTCTGTCCAGTCATTTTCATCTGGAGGTTTTGATGGCTTTAATGGACGCATCAAAGGGTCCGGCGTTGATACTTTTCGTGTTAGTCTATCAAGTGCTGTTAGCTCATCCAGCCATGGCTCTGGCCACGATGATGGGGATGCTCTAGGTGATGTTTACATCTGGGGGGAAGGTGTAGGTGATGGTATCCTGGGTGGTGGAGGACATAAGCTTGAAAGTTCCTTGGGTGTTAAGTTGGATTCTTATGGGCCTAAAGCATTGGACTCTGCTGTGCTACTGGATGTTCAAAATATAGCATGTGGTGGAAGGCATGCTGCTCTGGTTACGAAACAAGGAGAGCTTTTCACATGGGGGGAAGAGTCAGGAGGCAGACTTGGTCATGGTGTAGATTCTGATGTCTCACACCCAAAGCTTGTTGATGCCTTAAAGAATACCAATATTGAACTTGTGGCTTGTGGAGAAAATCATTCCTGTGCCGTATCACTTTCGGGTGATTTGTACATATGGGGTGGCAGAAAATACAGTTTTGGTCTTTCTGGTCAAGGTGATGAAATGAGCCATTGGATCCCCAGGAGGCTAATTGGGCCATTGGAGGGAATACATGTCTCTTCTATTTCATGTGGACCTTGGCATACGGCCATTGTAGCCTCTGCGGGACAGTTGTTCACTTTTGGAGATGGGACCTTTGGTGTTCTTGGCCATGGGGATCGAAGAAGTTTCCCAACACCGAGAGAAGTTGAGTCTCTTAAGGGTCTACGAACAGTGCGTGCAGCTTGTGGTGTGTGGCATACTGCTGCAGTTGTGGAAGTTATGGTAGGGTCTTCAAGTTCAAGCAATTGCTCAGGAAAACTATTCACATGGGGGGATGGGGATAAGGGACGCCTTGGGCATGGAGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAACTTTTGTCAAGTTGCCTGCGGCCACAGCTTGACTGTTGCACTTACCACCAGCGGCCAAGTTTACACAATGGGTAGCCCTGTTTATGGTCAATTGGGCAACCCTCAAGCAGATGGCAAGATACCTGTTCGAGTGGAAGGAAAACTTGCCAAAAGTTTTGTTGAAGAGATTTCTTGTGGTGCTTATCATGTTGCTGTCTTAACTTCAAGAACTGAAGTTTATACTTGGGGGAAAGGGGCTAATGGTAGATTAGGTCATGGGGACACAGATGATAGAAATGGCCCTACATTAGTTGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACAAATTTCACCACAGCCATTTGTCTTCATAAATGGGTATCAGGTGTTGATCAGTCGCTGTGCTCTGGATGCCGTCTGCCTTTTAATTTCAAAAGAAAACGGCACAATTGTTACAACTGTGGCCTTGTCTTTTGTCATTCATGCAGCAGCAAAAAGTCTCTTAAGGCTTCAATGGCACCTAATCCCAATAAACCTTATCGTGTCTGTGATAATTGCTTCAGCAAACTACGGAAATCCTTTGGGAATGACTCATCCTCTCACTCTGCATTGAGTAGAAGAGGGAGTATGAATCAAAGATTGAACCAAAACTTGGAAAATGATGATAAGATTGGTTCGCAGGGACTTGTGCAGATGGGAACGTATTCTACAGGGGAGTCTTTTAAAGACACTGAAAGTGTGTCTTCCAAGAGGAACAAGAAACTAGAATTTAGTAGTAGTCGGGTATCTCCCCTTCCAAATGGGTTTGCTCAATGGGGTGCAGTTAACACCTCTAAATCTGTCAAACCAGTATTTGGGTCATCAAAGAAATTTTTTTCTGCTTCGCTTCCTGGGTCACGCATTGTATCTCGAGCAACTTCACCTACATCAAGGCGTTCCAGCCCACCTCGTGCTGCTACACCAAGTTCTACTATGATAGCACTTTCTTCACCAAACAAAACCGTGGAGGATGCTAAGAGGACAAATGACAATCTCAGTCAAGAAGTTCTGAAACTTAAAGCTCAGGTTGAAGAACTTACACGTAAAACACATCTTCAAGAGGTTGAGCTGGAGAAAACCTCAAAACAGCTAAAGGAAGCAGTGGCAATTGCAGGAGAAGAGACAGCAAAGTGCAAAGCGGCAAAGGAAGTGATCAAGTCACTTACTGCTCAATTGAAGGAGATGGCCGAAAGGCTGCCTCTTGGAGCAGTAAGAAGTAGCAAGACACCTGCCCCAGGTTCCCCTGGACCTAATCCTTCCAGTGACGTTTCAAATGTAATGGACCGACTTAGCAGTCCACTTGCTGCCCATGAAATAGGTTTAAATTGGTCAAACCGTCATGACATTGCGAATGGGTCAAGTGCTCCCAACAACCTTGCCACAAATAACTCTGGGACCGGTCAAATGGAGAATTCATCCAGGAATAAGCACAGAACAACTGATGCTGACGCTAATTATGGGTCTGAATGGGTAGAGCAAGACGAGCCGGGTGTGTACATTACCCTTGTGTCAATGCCTGGGGGTATTAAAGATCTCAAACGTGTCCGCTTCAGCCGGAAGCGGTTTAGTGAGAAAGAAGCAGAGCAATGGTGGGCTGCAAACAGAGCTCGAATATATCAGCAGTATAATGTTCCTATGGTTGACAAGACTGGTATTGGTCCCGGAAGCGAAGGCATAGCACATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54782.p1 GENE.R_Transcript_54782~~R_Transcript_54782.p1 ORF type:complete len:1096 (+),score=228.52,RCC1|PF00415.14|0.15,RCC1|PF00415.14|5.2e-11,RCC1|PF00415.14|0.00018,RCC1|PF00415.14|2.6e-11,RCC1|PF00415.14|1.8e-13,RCC1|PF00415.14|2e-07,RCC1|PF00415.14|3.3e-13,BRX|PF08381.7|2.1e+03,BRX|PF08381.7|2.7e-28,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0011,RCC1_2|PF13540.2|0.0001,RCC1_2|PF13540.2|0.013,RCC1_2|PF13540.2|0.53,RCC1_2|PF13540.2|0.002,RCC1_2|PF13540.2|4.8e-05,RCC1_2|PF13540.2|1.7e+02,BRX_N|PF13713.2|1.5e-17,FYVE|PF01363.17|7.4e-14,BRX_assoc|PF16627.1|1.8e-07,PH_12|PF16457.1|1.8e-06,PH_12|PF16457.1|3.9e+03 R_Transcript_54782:537-3824(+)
MNADQARAGPVERDIELAITALKKGTNLLKYGRRGKPKFCPFRLSNDESLLVWFSGNEEKHLKLSHVSRIIPGQRTPIFQRHPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISRYHRRGRADPRSGISSEANSPKAQTQRSSPLSSPFGSGDGSQKDGADPLYASYESPQKIGLEKALSDVILYTIPSKSFIPPESVSSSVQSFSSGGFDGFNGRIKGSGVDTFRVSLSSAVSSSSHGSGHDDGDALGDVYIWGEGVGDGILGGGGHKLESSLGVKLDSYGPKALDSAVLLDVQNIACGGRHAALVTKQGELFTWGEESGGRLGHGVDSDVSHPKLVDALKNTNIELVACGENHSCAVSLSGDLYIWGGRKYSFGLSGQGDEMSHWIPRRLIGPLEGIHVSSISCGPWHTAIVASAGQLFTFGDGTFGVLGHGDRRSFPTPREVESLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGQVYTMGSPVYGQLGNPQADGKIPVRVEGKLAKSFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNGPTLVEALKDKQVKSIACGTNFTTAICLHKWVSGVDQSLCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRKSFGNDSSSHSALSRRGSMNQRLNQNLENDDKIGSQGLVQMGTYSTGESFKDTESVSSKRNKKLEFSSSRVSPLPNGFAQWGAVNTSKSVKPVFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRAATPSSTMIALSSPNKTVEDAKRTNDNLSQEVLKLKAQVEELTRKTHLQEVELEKTSKQLKEAVAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPLGAVRSSKTPAPGSPGPNPSSDVSNVMDRLSSPLAAHEIGLNWSNRHDIANGSSAPNNLATNNSGTGQMENSSRNKHRTTDADANYGSEWVEQDEPGVYITLVSMPGGIKDLKRVRFSRKRFSEKEAEQWWAANRARIYQQYNVPMVDKTGIGPGSEGIAH*

Click here to download the sequence:
Link to NCBI Protein BLAST