Transcript Information: R_Transcript_54880.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4767544675655
Replicate 22.9406583216104
Replicate 33.0798974919197
Condition 2: 8 Hour
Replicate 11.646108567882
Replicate 22.8812340747746
Replicate 32.64393207916
Condition 3: 24 Hour
Replicate 12.8938412471896
Replicate 21.9151625367168
Replicate 32.1458534006762


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54880.p1 GENE.R_Transcript_54880~~R_Transcript_54880.p1 ORF type:complete len:357 (+),score=47.53,UBN2_3|PF14244.2|1.5e-41,UBN2_3|PF14244.2|4.4e+03,Retrotrans_gag|PF03732.13|1e-06 R_Transcript_54880:138-1208(+)
ATGACAGGAGGAGATAAAATTATCATTAAACCAGAATATTACTTGAGCTCATCTGATGGGCCAGGAAATATTATTTCTCATTATACTCTTACCGGGGAAAACTATGGGAGATGGGTTAAACACATCTCAAATTCCCTTCGTTCAAAAGATAAATTTTGTTTTGTTGATGGAACCCTTCCCAAACCCGATGTGAAATCTCCAGATGTAAATGCCTGGACAAAATGTAACTCTATGGTGATTGCTTGGATCAATAATACTATTTCGATTGAACTCCAGGGAAGTATTTCTTTTGCAGAGACGGCACGAGACCTTTGGCTTGATCTTGAAGAACGTTTTTCACAAGGTAAAGCACCTCGTATCTATCAATTGAAGAGCGACATTACTCAAATGTCGCAAGACGGAAAATCTGTCCTTGGTTATTTTTCCAATCTGAAGACACTATGGGATGGATTGGGTGATTTAAATCCTTTACCTGAGTGTACTTGCAAGGCCAAAGCTGAATATCAACGACGTCATGAAGAGGAGCGAGTATATCAATTTCTTATGGGACTTGACGCTGAGATATTTGATTCGGTAAGATCTCAAATTCTTAATGCTGAAAATTTACTCAATGTGAGTAAGGCTTATGCTGCAGTTATTAGAGCGGAAAAACAACGTGGACTCGTCCAAAATCGGCACATAAATCCCAACAATGCAGCCTTGGAATCCATTGGAGTGGCTGCTGCAGTGAAAGGGAGTTACAGACCTCGTTGTACTCACTGTAACAAGTTGGGACATGAGAAGAAGCAATGTTATGAACTTATTGGCTACCCTCCAAAGTGGGACAACAGGCGTGCTTCTAACCGCAACAACAACAGTAGAGAGAGGTTACAGTCAGGGGAAAAGGACGTAGCACGCCTCAATATGCAGCAGCAACAATTGCAAATTCAGAATCTCAAATGGATCAAACCAATCAAAATTCAGTCAATGCTCCTGATGTTGGTTTTGCAGGATTTACTCAATCTCAAGTGGACCACTTGTTCAATCTTTTCAAAGAAAAACAGGTTCAAGAAAATTCTTCTAATCGCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54880.p1 GENE.R_Transcript_54880~~R_Transcript_54880.p1 ORF type:complete len:357 (+),score=47.53,UBN2_3|PF14244.2|1.5e-41,UBN2_3|PF14244.2|4.4e+03,Retrotrans_gag|PF03732.13|1e-06 R_Transcript_54880:138-1208(+)
MTGGDKIIIKPEYYLSSSDGPGNIISHYTLTGENYGRWVKHISNSLRSKDKFCFVDGTLPKPDVKSPDVNAWTKCNSMVIAWINNTISIELQGSISFAETARDLWLDLEERFSQGKAPRIYQLKSDITQMSQDGKSVLGYFSNLKTLWDGLGDLNPLPECTCKAKAEYQRRHEEERVYQFLMGLDAEIFDSVRSQILNAENLLNVSKAYAAVIRAEKQRGLVQNRHINPNNAALESIGVAAAVKGSYRPRCTHCNKLGHEKKQCYELIGYPPKWDNRRASNRNNNSRERLQSGEKDVARLNMQQQQLQIQNLKWIKPIKIQSMLLMLVLQDLLNLKWTTCSIFSKKNRFKKILLIA*

Click here to download the sequence:
Link to NCBI Protein BLAST