Transcript Information: R_Transcript_54920.p1


Annotated TAIR IDAT1G27700.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9640394-9641752 | Reverse length=297
E-Value9.9E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6088306905016
Replicate 25.0680725142788
Replicate 36.1216281506959
Condition 2: 8 Hour
Replicate 16.4029129603429
Replicate 25.3331988299379
Replicate 37.406691689928
Condition 3: 24 Hour
Replicate 15.2116861235305
Replicate 26.0842093491248
Replicate 37.1072144529293


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54920.p1 GENE.R_Transcript_54920~~R_Transcript_54920.p1 ORF type:complete len:348 (+),score=80.26,Syntaxin-6_N|PF09177.7|6.4e-20 R_Transcript_54920:320-1363(+)
ATGGCAATGCACTTTGATCGGTGGGAAAAGGATCCCTTTTTCTCAGCAGCTGAGGAGGTTCAAGAATCTGCTGATAGGATGGAATCTACTTATAGAACGTGGATTCATGCTTCGAAGGATGCCTCCGGTAGCCGGAATCCCGATGAGCTTCACCGTGATTTACGCACTGCCCTCGGCACCGCCAAATGGCAGTTGGAAGAGTTTGAGCGAGCTGTGAGATCTAGTTACAAGAATAATGCTGCAGATGAAGCTGAAGACCGGCATCGCCAGTTTATTCTTGCAATGGAGGAAAAAGTTTCTCTAGTTGAGAAGGCATTACTGGAATCATCAGTTTCTGATAGTAAGACATCAACCCAATGGGTACGGTTGGATGAAGGGGAACGAGATGAACTTGCTTTGTTCCTCTCTGGCCCAACAATTTCGGGTGGCAAATTGGATATCAAAGTTGTTGGCAATGGTGATAGGCATGCTAATTCGCATGAAAGGACTACAAAGCCTGTGTCTAGCATTTGGAAAAACTCTTCTTGTGCATTGGAGTTGGCGTTAGTGGAAGGGAAAAAAGTAAAGTTGCCTGGCCATTGTAGAACTGCCAGCGCTAGTGCTGACATTGGTTCCTGGAATATTCTGGTTAACGAGGATAAAATTGCACGTGGTTCTTCCAGTGGACGAGCTGATCCTCCTCCCCGGAGAGTGCCAAGTTACTCAGGTTTTATTGGCACCATGGAGTCTGCTTCCAAATTAAAGGTGCCCAAGAATGGTTTCAGGAAATGGAAGGCTGCAGACCGGCAACATGAAGATGACGTTGCCTTTTTGAGGACTCAAGATTTGAGCAGGGGACCAATTGCATGCTTTGAGAAAAGCAAGAGCTGTCTCAATACTGGTGATGATTCCTGTGATAAACATTTGTATGGCTGGTATGGAGCTGTTCAGAGGTTGCTTCAAAGGTCTCAGTATCAAGTACAATATAGTCGTCCTGTACAATTGACCTTCTGGAGTGTCCTTTTGCTTTTCTCCATTGTCCTTTTCATAGTGCGTGCAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54920.p1 GENE.R_Transcript_54920~~R_Transcript_54920.p1 ORF type:complete len:348 (+),score=80.26,Syntaxin-6_N|PF09177.7|6.4e-20 R_Transcript_54920:320-1363(+)
MAMHFDRWEKDPFFSAAEEVQESADRMESTYRTWIHASKDASGSRNPDELHRDLRTALGTAKWQLEEFERAVRSSYKNNAADEAEDRHRQFILAMEEKVSLVEKALLESSVSDSKTSTQWVRLDEGERDELALFLSGPTISGGKLDIKVVGNGDRHANSHERTTKPVSSIWKNSSCALELALVEGKKVKLPGHCRTASASADIGSWNILVNEDKIARGSSSGRADPPPRRVPSYSGFIGTMESASKLKVPKNGFRKWKAADRQHEDDVAFLRTQDLSRGPIACFEKSKSCLNTGDDSCDKHLYGWYGAVQRLLQRSQYQVQYSRPVQLTFWSVLLLFSIVLFIVRAI*

Click here to download the sequence:
Link to NCBI Protein BLAST