Transcript Information: R_Transcript_54924.p1


Annotated TAIR IDAT1G27700.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:9640394-9641752 | Reverse length=297
E-Value4E-78
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.7639355046832
Replicate 25.1455722146984
Replicate 36.6461802039541
Condition 2: 8 Hour
Replicate 15.7938384663904
Replicate 25.7949327588425
Replicate 37.8230885208992
Condition 3: 24 Hour
Replicate 17.6310457827298
Replicate 26.4612589425917
Replicate 38.2001823193165


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_54924.p1 GENE.R_Transcript_54924~~R_Transcript_54924.p1 ORF type:complete len:355 (+),score=83.94,Syntaxin-6_N|PF09177.7|6.6e-20 R_Transcript_54924:319-1383(+)
ATGGCAATGCACTTTGATCGGTGGGAAAAGGATCCCTTTTTCTCAGCAGCTGAGGAGGTTCAAGAATCTGCTGATAGGATGGAATCTACTTATAGAACGTGGATTCATGCTTCGAAGGATGCCTCCGGTAGCCGGAATCCCGATGAGCTTCACCGTGATTTACGCACTGCCCTCGGCACCGCCAAATGGCAGTTGGAAGAGTTTGAGCGAGCTGTGAGATCTAGTTACAAGAATAATGCTGCAGATGAAGCTGAAGACCGGCATCGCCAGTTTATTCTTGCAATGGAGGAAAAAGTTTCTCTAGTTGAGAAGGCGTTACAGGAATTGCCAGTTTCTGATAGTAAGACATCAACCCAATGGGTACGGTTGGATGAAGGGGAACGAGATGAACTTGCCTTGTTCCTCTCTGGTCCAACCATTTCGGGTGACAAATTGGATATCAAAGTTGTTGGCAATGGTGATAGGCATGCTAATTCGCATGAAAGGACTACAAAGCCTGTGTCTAGCATTTGGAAAAACTCTTCTTGTGCATTGGAGTTGGCGTTATTGGAAGGGAAAGAAGTAAAGTCGCCTGGCCATCGTAGAACTGCCAGCGCTAGTGCTGACATTGGTTCCTGGAATATTCTGGTTAATGAGGATAAAATTGCATGTGATTCCTCCAGTGGCCGAGCTGATCTTCCTCCCCGGAGAGTGCCAAGTTACTCAGGTTTTATTGGCACCATGGAGTCTGCTTCCAAATTAAAGGTGCCCAAGAATGGTTTCAGGAAATGGAAGGCTGTGGACCGGCAACATGAAGATGATGTTGCCTTGTTGAGGACTCAAGATTTGAGCAGAGGACCAATTGCATGCTTTGAGAAAAGCAAGAGCTGTCTCAATACTGGTGATGATTCCTGTGATAAACATTTGTATGGCTGGTATGGAGCTGTTCAGAGGTTGCTTCAAAGGTCTCAGTATCAAGTACAATATAGTCGTCCTGTACAATTGACCTTCTGGAGTGTCCTTTTGCTTTTCTCCATTGGTAGTTCATATGGCCTCTCTTTAGCCTCAGGCTGCTGGAGCTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_54924.p1 GENE.R_Transcript_54924~~R_Transcript_54924.p1 ORF type:complete len:355 (+),score=83.94,Syntaxin-6_N|PF09177.7|6.6e-20 R_Transcript_54924:319-1383(+)
MAMHFDRWEKDPFFSAAEEVQESADRMESTYRTWIHASKDASGSRNPDELHRDLRTALGTAKWQLEEFERAVRSSYKNNAADEAEDRHRQFILAMEEKVSLVEKALQELPVSDSKTSTQWVRLDEGERDELALFLSGPTISGDKLDIKVVGNGDRHANSHERTTKPVSSIWKNSSCALELALLEGKEVKSPGHRRTASASADIGSWNILVNEDKIACDSSSGRADLPPRRVPSYSGFIGTMESASKLKVPKNGFRKWKAVDRQHEDDVALLRTQDLSRGPIACFEKSKSCLNTGDDSCDKHLYGWYGAVQRLLQRSQYQVQYSRPVQLTFWSVLLLFSIGSSYGLSLASGCWSF*

Click here to download the sequence:
Link to NCBI Protein BLAST