Transcript Information: R_Transcript_55062.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value6.2E-103
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 155.837116844604
Replicate 250.940391305364
Replicate 348.906368032292
Condition 2: 8 Hour
Replicate 158.373475507146
Replicate 264.440853576075
Replicate 372.912798778938
Condition 3: 24 Hour
Replicate 177.688444711471
Replicate 260.30298633373
Replicate 371.666071042331


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55062.p1 GENE.R_Transcript_55062~~R_Transcript_55062.p1 ORF type:5prime_partial len:237 (+),score=60.23,RBM39linker|PF15519.2|1.9e-23,RRM_1|PF00076.18|2.8e-06,RRM_1|PF00076.18|0.00028,RRM_6|PF14259.2|0.013,RRM_6|PF14259.2|4.6e+03,RRM_6|PF14259.2|0.045,RRM_5|PF13893.2|2.2,RRM_5|PF13893.2|0.0015 R_Transcript_55062:2-712(+)
GACCTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTCGCTCAAGTTGAACATGCAAAGGCAGCTCAGAGTTTGAATGGTAAATTGGAAATTGCTGGTAGATATATTAAGGTTTCATTGGTCACTGAACATGTTGGCGGACAAGAAGCTGGTACAAATGCTGCAGATTTTGATGACGATGATGGTGGTGGTTTGGCTTTGAATGCTCGATCTAGAGCATTACTGATGCAGAAACTGGATCGCACCGGTACAGCTTCGAGCATTGCTGGTACACTTGGTGTAGCTGGGCTTAATGGTTCTGCACCTGTCCAGCAACCCATTCCGCTACCTATCAATGGGCAGGCTGCTATACCGGCCCCTACACTTCCTGGCCAAATTCTTCCTTCTCCACCTTCCGAACCTGTTGGGACTCCAAGCGATTGTTTGTTGTTGAAGAATTTATTCGATCCAGCTACTGAGACTGAACCAGATTTCGACTTGGACATTAAAGAAGATGTTGAGGAGGAATGTTCAAAGTTTGGTCGAGTGAGACATATCTATGTTGACAAGCATAGTGCTGGTCATGTGTATTTACGTTTCGACGACATAGATGCAGCGAAGAGGGCTCAAAATGGAATGCATATGAGATGGTTTGCTCGCAGATTGATTTCAGCTATCTACATGCAACCCCAAGATTATGAAGCCAGGTTCAAAGATTCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55062.p1 GENE.R_Transcript_55062~~R_Transcript_55062.p1 ORF type:5prime_partial len:237 (+),score=60.23,RBM39linker|PF15519.2|1.9e-23,RRM_1|PF00076.18|2.8e-06,RRM_1|PF00076.18|0.00028,RRM_6|PF14259.2|0.013,RRM_6|PF14259.2|4.6e+03,RRM_6|PF14259.2|0.045,RRM_5|PF13893.2|2.2,RRM_5|PF13893.2|0.0015 R_Transcript_55062:2-712(+)
DLETGHCKGFGFVQFAQVEHAKAAQSLNGKLEIAGRYIKVSLVTEHVGGQEAGTNAADFDDDDGGGLALNARSRALLMQKLDRTGTASSIAGTLGVAGLNGSAPVQQPIPLPINGQAAIPAPTLPGQILPSPPSEPVGTPSDCLLLKNLFDPATETEPDFDLDIKEDVEEECSKFGRVRHIYVDKHSAGHVYLRFDDIDAAKRAQNGMHMRWFARRLISAIYMQPQDYEARFKDSA*

Click here to download the sequence:
Link to NCBI Protein BLAST