Transcript Information: R_Transcript_5514.p1


Annotated TAIR IDAT3G14172.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4698860-4704773 | Reverse length=1270
E-Value6.2E-172
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.374044589786
Replicate 29.2968693385598
Replicate 312.422061681496
Condition 2: 8 Hour
Replicate 111.50330968737
Replicate 211.251957600255
Replicate 315.068287991906
Condition 3: 24 Hour
Replicate 116.528968529967
Replicate 213.010564946112
Replicate 316.240770215438


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5514.p1 GENE.R_Transcript_5514~~R_Transcript_5514.p1 ORF type:complete len:1407 (+),score=425.50 R_Transcript_5514:996-5216(+)
ATGACGTCGGATGTGCCTCTTGATTATGCTGTTTTTCAGTTGTCTCCAAAACGTTCACGTTGTGAGTTGTTCGTTTCTTATGATGGCAGTACCGAGAAGCTTGCATCAGGGCTTGTAAAACCTTTTGTTACTCACCTCAAGGTTGCAGAAGAACAAGTAGCATTGGCTGTGAAGTCCATCAAACTTGAGGTGGAGAGATATAAAAATGCAGAAGCATGGTTCACAAAGGGAACTCTTGAGAGGTTTGTGCGGTTTGTTAGCACACCTGAGGTTTTGGAATCGGTCAACACGTTTGACACAGAGATGTCCCAGTTGGAAGCAGCCCGCAAAATCTATTCACAGGGTTCGGGAGACCATCAATCCAGTGCATCAAAAGGAGATGGAACCGGAGCCGCCGCAGCATCTGATGCTACAAAGAAGGAGCTCTTACGAGCCATTGATGTAAGGCTTGCAGCAGTTAAACAGGACTTGAGTACAGCTTGCACCCGTGCGTTTTCTGCTGGTTTCTATCCTGAAACTGTCTCTGAACTTCAGCACTTTGCAGATCGCTTTGGTGCTCACCGCCTGAGTGAAGCATGCAGCAAGTTCATTGAGCTCTCACAGAGACGCCCTGATCTGTTCAGCAAGAACAATCCAGCATGGAAATCCTCGTCCGGCAATGCCCTCCGCTCTTCTACCGGCTCCGACATGTCCCTGGACTCCCCATCCGACCAACCCAAATCCTCCACATGCAAGGCCACGTTCCCTTTGCAGCATTTCTCTAGGGAGCCGAGCCCCAGCCCTGTGGATGAACAGGAGGAGAGAGAAAATCAAAAAGACCGAGACAATGACAAAGAGAAAGACAACCCTTCCACTTCTTCAACCACTACTACAACGACCGAGTCAGACCCCTCAACTCAGTCTTCTCAAAAGCCTCAACTCACAAGGCGGCTTAGTGTGCAAGAACGAATCAGCCTCTTTGAGAGCAAGCAGAAGGAAAATTCCCCCTCTGCTGCTACTCCTTCCTCTGCTTCAGTTGGAGGAAAACCCGAGCTCCGGCGTCTCTCCTCTCTTTCCTCTGATATTGCCTCATCCTCCGACAGGGTTGTGTTGAGGAGATGGAGTGGGGCCAGTGACATGAGCATTGATGTGAGTGGAGAGAGAAAGGAACCTGATAGCAATGCCAATACTCCAACACCCACTTCTGCTACTTCAAAATTTCCTGTTCTCCCTCCAAAATCTAAGGATCAGGTTGATTTGAAGGGGGACGAGGGGGATTCTGAGAAGGATTCTAAGTTGCCTGTGAAGGCTAAATTTGGTGCAAACTTGAAAATTGCCTCATCTGGTGATGGTTCTGGGTCTGCATCAGAGGAGCCTGCCTCATCTGATGCAAACTTGAAAGTTGCATCCTCTTCAGGTAGATCGGAGAATGTGGGGTTGAAAAGTCAACCTCCTAGTGGTAGTAGGATTCGGCCAAGAGCAGCATCTTTTGGAAGGGTTGAGGATTTTGGGTTGGAAAATCAATCTACTCCTATCCAGACGCAGTTTAATTCCTCTGACCAAACCTTCTCTGAGGAGAAGGTGAAGGGCCCTTCTGGTGGTGGAGCGCAGGACACTGGCAACAATTTTGAAGCATCAGATAGTCATCAGACTCATCACGCTGAGGTTGAGGAAGTCAGGGTGAGGGACCAGCCAAGTTTTAGATCATTATTCAGGTCATCTCAGAGGAGAACGGTTGAAGTTTCACAAGATTCAGTAGCCTCTGAAGTCCATTTGCAATCTGTGATCCCTGACAAAGACAGTGAGGCTGATTCCACATTTGAGCCTAGGTGGAAGCCTTTAGTGGCAGATATCGAAAAGGGTGGAAGGAAGGATTTTGAGACATTTGACAAGCAAGCTGAAAATCCCTCAATGCAAATGGAGAGTTCTGGTTCATCGAGGCCTAAATTACAGGGGCATTTTTCTGAACAAATGAAGAGGCCTGGAGGAAGAAGGGAAGAGGGCGGTTCTGGTTCTGGGAGCAGCCAGTCAGGCATCACTAGGAAAAATGCACCTGAGAGTCAAGAAGCTGTTTCTTCGATATCCTTGGCTCCTGTTGATCAAGCTCAGAGGTTGAGACAGCCGAAAGCAAACCAAGGGCTGAATGACGAGTTGAAAATGAAGGCGAATGAGCTTGAGAAGCTCTTTGCGGAACACAAACTTCGTGTTCCTGCAGATCAATCAAATTCTGCTCGAAGAACCCGGCCTGCTCAGATGCCAAAGGACCACGAAGGGAGTTCTGCTAATAGGAAGCAGGTGGTGGAAGCTTCTCCTGCACAGTTTGCTAACCTGACAATCGAGGCCGACGTTACTCCTGGTTCCAGTAATATGGAGAATTTCGTTTCTACTCCCTTGATGAAAACTGTAGTCATTCAGGATTATGAAGTCACACCAAAGAACAATATCTATGGCCTTAGTTTTTCAGATGATTCTAGAGGACAATTTTATCAGAAATATATGCAGAAGAGAGATGCCAAATTAAGGGAAGATTGGAGTTTGAGAAGGGCTGACAAGGAAGCTAAGATGAAAGCCTTGCAGGATAGCCTTGAGAAAAGTAGAGCTGAGATGAAGGTCAAGTTGTCAGGGCCTACAGACAAGAGGAATTCTGTTCAGGATTCTCGTCGACGAGCAGAAAAATTAAGGTCATTCAATGCCCGATCAGCAATGAAGAGAGAGCAGAAGCCAATAGACTCGTTCATGAGTGATGAGGATGAAGATCAAGCTGAATTCCTTGGGAAAAAGCTAAGTGAGACATTTTTGGGGGATGGATCTTCTCGAAGTGCACAAAGTAAAAGGGCTTTACCAAACAAAAATGCAGCATCTTCCACACCTCGTAACTCAACAGCAGCAATTCCTCGGTCTACTGGGAAAGCCTCTAACTCTGCTGCAGGAAGGCGAAGATTGAATTCTGATAATCCTCTTGCGCAGTCAGTTCCTAATTTCCCTGACTTACGGAAGGAGAACACAAAACCTACATCCATAGGAGGTAAATCAAGCCGTCCACAAGGACGAAACCATGCTCGCAAAAAGAGCAGTTGTGAAGACATGCCACAGGTCAATGAAGAAAGATCACGACGGCCTCAGTCCTTGAGAAAGAGCACAGCTAATCCTATGGAGTTGAATGATTCCCGTAACTCTGATGATGTTGATGATTCTGTCTTCATGTCATCCAAGTTTGATAAAGAGGAGCATGAGGACTATGATAAATTCTCAAAGGATATAGAGTCAAAAGGTTTCGCAAGAAAGGGTAATGGTCTTGGGCGTATCACTGTTTCTGGCATTAGTGGATCAAAAGCTCCAGTGATGGTAGAGGCTGTGAGAAATGGGCATGATCTTGATGATTTGAGCTTTGAGACAGAAGAGATGACAGATGTGACCAAAGAAGAGGAGGATGATTTTGACACCACATTACGAGGAGAATCTGCTGAGATGAACAATGGCAAAGGGAGACTGAGCCAAGAATCTGACAAATCAGCAAATTCTGGGTATGAAAACAGTGATGCCTTTAGTTTTTCCCAAGCACGGCCTGCTTCCGCCACTGAACTGCCGACTTCCATGCCTTCTCTTTTTGGCTCAATGGGATCAATACAAGATTCACCAGGGGAAAGCCCTGGATCGTGGAATTCTCGTGTGCTCAATCCATTTTCCTTTTCACATGAAATTTCAGACATTGATGCATCTGACTCGCCACTTGGGAGCCCTGCATCTTGGAACTTCCATTCTCTTGGGCAGTCTGATGCTGATGCTGCTAGAATGAGAAAGAAATGGGGAGCTGCTCAGAAACCCATTGTTGGCACTGACTCTTCACATAGCCGCAAGGATGTAACTAAAGGATTTAAGCGGTTCCTGAAGTTTGGGAGGAAGAATCGTGCTTCTGAAAGTCTAGCAGACTGGATTTCTGCAACTACGTCCGAAGGAGATGATGACACTGAAGATGGAAGAGATCCTATTAATCGGTCATCATCAGAAGATTTGAGGAAATCAAGAATGGGATTCTCACTCAGCCATCAGTCTGATGATGGGTTTAATGAAAGTGAACTGTATAATGAACAAGTTCATGCCTTACAAAGCTCAATTCCAACACCACCAGCAAATTTCAAATTGAGGGAAGAACATTTGTCTGGAAGTTCTATGAAAGCGCCAAAGTCATTCTTTTCACTCTCAAATTTCCGGAGCAAGGGAAGCGACTCAAAGCCCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5514.p1 GENE.R_Transcript_5514~~R_Transcript_5514.p1 ORF type:complete len:1407 (+),score=425.50 R_Transcript_5514:996-5216(+)
MTSDVPLDYAVFQLSPKRSRCELFVSYDGSTEKLASGLVKPFVTHLKVAEEQVALAVKSIKLEVERYKNAEAWFTKGTLERFVRFVSTPEVLESVNTFDTEMSQLEAARKIYSQGSGDHQSSASKGDGTGAAAASDATKKELLRAIDVRLAAVKQDLSTACTRAFSAGFYPETVSELQHFADRFGAHRLSEACSKFIELSQRRPDLFSKNNPAWKSSSGNALRSSTGSDMSLDSPSDQPKSSTCKATFPLQHFSREPSPSPVDEQEERENQKDRDNDKEKDNPSTSSTTTTTTESDPSTQSSQKPQLTRRLSVQERISLFESKQKENSPSAATPSSASVGGKPELRRLSSLSSDIASSSDRVVLRRWSGASDMSIDVSGERKEPDSNANTPTPTSATSKFPVLPPKSKDQVDLKGDEGDSEKDSKLPVKAKFGANLKIASSGDGSGSASEEPASSDANLKVASSSGRSENVGLKSQPPSGSRIRPRAASFGRVEDFGLENQSTPIQTQFNSSDQTFSEEKVKGPSGGGAQDTGNNFEASDSHQTHHAEVEEVRVRDQPSFRSLFRSSQRRTVEVSQDSVASEVHLQSVIPDKDSEADSTFEPRWKPLVADIEKGGRKDFETFDKQAENPSMQMESSGSSRPKLQGHFSEQMKRPGGRREEGGSGSGSSQSGITRKNAPESQEAVSSISLAPVDQAQRLRQPKANQGLNDELKMKANELEKLFAEHKLRVPADQSNSARRTRPAQMPKDHEGSSANRKQVVEASPAQFANLTIEADVTPGSSNMENFVSTPLMKTVVIQDYEVTPKNNIYGLSFSDDSRGQFYQKYMQKRDAKLREDWSLRRADKEAKMKALQDSLEKSRAEMKVKLSGPTDKRNSVQDSRRRAEKLRSFNARSAMKREQKPIDSFMSDEDEDQAEFLGKKLSETFLGDGSSRSAQSKRALPNKNAASSTPRNSTAAIPRSTGKASNSAAGRRRLNSDNPLAQSVPNFPDLRKENTKPTSIGGKSSRPQGRNHARKKSSCEDMPQVNEERSRRPQSLRKSTANPMELNDSRNSDDVDDSVFMSSKFDKEEHEDYDKFSKDIESKGFARKGNGLGRITVSGISGSKAPVMVEAVRNGHDLDDLSFETEEMTDVTKEEEDDFDTTLRGESAEMNNGKGRLSQESDKSANSGYENSDAFSFSQARPASATELPTSMPSLFGSMGSIQDSPGESPGSWNSRVLNPFSFSHEISDIDASDSPLGSPASWNFHSLGQSDADAARMRKKWGAAQKPIVGTDSSHSRKDVTKGFKRFLKFGRKNRASESLADWISATTSEGDDDTEDGRDPINRSSSEDLRKSRMGFSLSHQSDDGFNESELYNEQVHALQSSIPTPPANFKLREEHLSGSSMKAPKSFFSLSNFRSKGSDSKPR*

Click here to download the sequence:
Link to NCBI Protein BLAST