Transcript Information: R_Transcript_5519.p1


Annotated TAIR IDAT3G12130.1
Annotated Gene NameKH domain-containing protein / zinc finger (CCCH type) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3864486-3866406 | Reverse length=248
E-Value7.7E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1108.60511768058
Replicate 288.884338428995
Replicate 397.811769535571
Condition 2: 8 Hour
Replicate 191.740374002345
Replicate 295.63003800747
Replicate 3105.70287917939
Condition 3: 24 Hour
Replicate 1131.47170939065
Replicate 2103.2186116079
Replicate 3118.9961544811


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5519.p1 GENE.R_Transcript_5519~~R_Transcript_5519.p1 ORF type:complete len:300 (+),score=64.76,zf-CCCH|PF00642.20|0.0013,zf-CCCH|PF00642.20|0.00054,zf-CCCH|PF00642.20|1e-08,KH_1|PF00013.25|8.7e-12,Torus|PF16131.1|0.011,Torus|PF16131.1|1.3e+02,Torus|PF16131.1|0.001,zf-CCCH_2|PF14608.2|1.3,zf-CCCH_2|PF14608.2|0.12,zf-CCCH_2|PF14608.2|0.0041 R_Transcript_5519:298-1197(+)
ATGGAGTTCGGTGGACCTCGCAAGAGAGGCAGGCCTGAAGCTGCCCTTAACGGTAATGGTGGCTTCAAGAAATCTCGTCCAGAATCGGAGTCCTTTCCATCTGGTGTAGGAAGCAAATCGAAGCCTTGCACAAAGTTTTTCAGCACATCGGGCTGCCCATTCGGGGAGGGTTGTCACTTCTTGCATCATGTCCCTGGTGGATACAAGGCCGTGGTCCAGATGATGAACCTTGGAGGTGCTCCAGTTCCTCCACCAGCAAGAACTTCTGCAGTCCCCCTGTCTTTCCCCAATGGTTCATCAGCACCATCAGGCAAATCTAGAATGTGCAACAAGTTTAATACCCCTGAGGGCTGCAGGTTTGGAGACAAGTGTCACTTTGCTCACGGTGAATGGGAGCTTGGTAGGCCGTCTATTGCATCACATGACGATCCACGTGCCATGCCACCAATGTCAGGCAGGATGCCTGGCAGGATGGACCCTTTACCTCCAAGTCTCGGTGCTGCTGCCAACTTTGGCGCCTCTGCTACAGCCAAGATCAGTATTGACGCTTCGCTCGCAGGAGCAATTATTGGAAAGAGTGGGACGAACTCTAAGCAGATTTGTCGTGTTACTGGTGTGAAACTTGCCATCAGAGACCACGAATCTGATCCCAACTTGAGGAACATTGAACTCGAAGGTACATTTGATCAGATCAAGCAGGCTAGTTCTATGGTTCGGGAGCTGATAGTTAATGTTAAGGCGGCTTCTGGTGCTCCACCTGCCAAGCACGCAACAGGTCCTGGTGCTGCGAACAATTTCAAGACTAAGCTTTGTGAAAACTTCACAAAGGGATCCTGCACATTTGGAGACAGGTGCCACTTCGCTCATGGTGCTGAAGAGCTTCGAAAGACTGCAGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5519.p1 GENE.R_Transcript_5519~~R_Transcript_5519.p1 ORF type:complete len:300 (+),score=64.76,zf-CCCH|PF00642.20|0.0013,zf-CCCH|PF00642.20|0.00054,zf-CCCH|PF00642.20|1e-08,KH_1|PF00013.25|8.7e-12,Torus|PF16131.1|0.011,Torus|PF16131.1|1.3e+02,Torus|PF16131.1|0.001,zf-CCCH_2|PF14608.2|1.3,zf-CCCH_2|PF14608.2|0.12,zf-CCCH_2|PF14608.2|0.0041 R_Transcript_5519:298-1197(+)
MEFGGPRKRGRPEAALNGNGGFKKSRPESESFPSGVGSKSKPCTKFFSTSGCPFGEGCHFLHHVPGGYKAVVQMMNLGGAPVPPPARTSAVPLSFPNGSSAPSGKSRMCNKFNTPEGCRFGDKCHFAHGEWELGRPSIASHDDPRAMPPMSGRMPGRMDPLPPSLGAAANFGASATAKISIDASLAGAIIGKSGTNSKQICRVTGVKLAIRDHESDPNLRNIELEGTFDQIKQASSMVRELIVNVKAASGAPPAKHATGPGAANNFKTKLCENFTKGSCTFGDRCHFAHGAEELRKTAV*

Click here to download the sequence:
Link to NCBI Protein BLAST