Transcript Information: R_Transcript_5521.p1


Annotated TAIR IDAT3G12130.1
Annotated Gene NameKH domain-containing protein / zinc finger (CCCH type) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3864486-3866406 | Reverse length=248
E-Value4.8E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8789143896515
Replicate 213.475237580609
Replicate 311.880733305467
Condition 2: 8 Hour
Replicate 111.4206459642
Replicate 216.603789128343
Replicate 39.3467248716918
Condition 3: 24 Hour
Replicate 18.309355601072
Replicate 27.4889125337408
Replicate 311.025522883325


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5521.p1 GENE.R_Transcript_5521~~R_Transcript_5521.p1 ORF type:complete len:268 (+),score=52.06,zf-CCCH|PF00642.20|0.42,zf-CCCH|PF00642.20|0.00046,zf-CCCH|PF00642.20|9e-09,KH_1|PF00013.25|7.2e-12,zf-CCCH_2|PF14608.2|0.25,zf-CCCH_2|PF14608.2|0.11,zf-CCCH_2|PF14608.2|0.0035,Torus|PF16131.1|0.75,Torus|PF16131.1|1e+02,Torus|PF16131.1|0.00083 R_Transcript_5521:230-1033(+)
ATGTGGTTGCAGTGCATAAATCTGACAGTCATTTCAATTTTATGCAGCACATCGGGCTGCCCATTCGGGGAGGGTTGTCACTTCTTGCATCATGTCCCTGGTGGATACAAGGCCGTGGTCCAGATGATGAACCTTGGAGGTGCTCCAGTTCCTCCACCAGCAAGAACTTCTGCAGTCCCCCTGTCTTTCCCCAATGGTTCATCAGCACCATCAGGCAAATCTAGAATGTGCAACAAGTTTAATACCCCTGAGGGCTGCAGGTTTGGAGACAAGTGTCACTTTGCTCACGGTGAATGGGAGCTTGGTAGGCCGTCTATTGCATCACATGACGATCCACGTGCCATGCCACCAATGTCAGGCAGGATGCCTGGCAGGATGGACCCTTTACCTCCAAGTCTCGGTGCTGCTGCCAACTTTGGCGCCTCTGCTACAGCCAAGATCAGTATTGACGCTTCGCTCGCAGGAGCAATTATTGGAAAGAGTGGGACGAACTCTAAGCAGATTTGTCGTGTTACTGGTGTGAAACTTGCCATCAGAGACCACGAATCTGATCCCAACTTGAGGAACATTGAACTCGAAGGTACATTTGATCAGATCAAGCAGGCTAGTTCTATGGTTCGGGAGCTGATAGTTAATGTTAAGGCGGCTTCTGGTGCTCCACCTGCCAAGCACGCAACAGGTCCTGGTGCTGCGAACAATTTCAAGACTAAGCTTTGTGAAAACTTCACAAAGGGATCCTGCACATTTGGAGACAGGTGCCACTTCGCTCATGGTGCTGAAGAGCTTCGAAAGACTGCAGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5521.p1 GENE.R_Transcript_5521~~R_Transcript_5521.p1 ORF type:complete len:268 (+),score=52.06,zf-CCCH|PF00642.20|0.42,zf-CCCH|PF00642.20|0.00046,zf-CCCH|PF00642.20|9e-09,KH_1|PF00013.25|7.2e-12,zf-CCCH_2|PF14608.2|0.25,zf-CCCH_2|PF14608.2|0.11,zf-CCCH_2|PF14608.2|0.0035,Torus|PF16131.1|0.75,Torus|PF16131.1|1e+02,Torus|PF16131.1|0.00083 R_Transcript_5521:230-1033(+)
MWLQCINLTVISILCSTSGCPFGEGCHFLHHVPGGYKAVVQMMNLGGAPVPPPARTSAVPLSFPNGSSAPSGKSRMCNKFNTPEGCRFGDKCHFAHGEWELGRPSIASHDDPRAMPPMSGRMPGRMDPLPPSLGAAANFGASATAKISIDASLAGAIIGKSGTNSKQICRVTGVKLAIRDHESDPNLRNIELEGTFDQIKQASSMVRELIVNVKAASGAPPAKHATGPGAANNFKTKLCENFTKGSCTFGDRCHFAHGAEELRKTAV*

Click here to download the sequence:
Link to NCBI Protein BLAST