Transcript Information: R_Transcript_5527.p1


Annotated TAIR IDAT5G40490.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16225483-16227423 | Forward length=423
E-Value1.4E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.8773934280282
Replicate 25.6477390360295
Replicate 39.5686372237092
Condition 2: 8 Hour
Replicate 111.545550244112
Replicate 214.930841988893
Replicate 315.107194915069
Condition 3: 24 Hour
Replicate 116.41919124513
Replicate 213.191278260504
Replicate 315.653864744427


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5527.p1 GENE.R_Transcript_5527~~R_Transcript_5527.p1 ORF type:3prime_partial len:316 (+),score=63.89,RRM_1|PF00076.18|2.8e-14,RRM_1|PF00076.18|2.2e-18,RRM_6|PF14259.2|5e-13,RRM_6|PF14259.2|9.2e-14,RRM_7|PF16367.1|0.0057,RRM_7|PF16367.1|2e-09,RRM_5|PF13893.2|0.015,RRM_5|PF13893.2|1.1e-05 R_Transcript_5527:235-1179(+)
ATGGAGTCGAGAGAACCCGAATCCAACTACGAGGGTGGCCCAAACGACGACGTTCACGACAACAGTAATCCTTCTGCTCACAATGAAGATGACGATCGCTCTCAACCTCCTACTGGCGATGGTGCTAGTCCTGGAAAGATTTTCATAGGAGGTTTAGCTAGAGAGACAACTTCTGCGCAATTTGTCAAGCATTTCGGGAAGTATGGAGAGATCACAGATTCCGTGATAATGAAGGATAGGAGGACTGGTCAGCCTCGTGGGTTCGGATTTATAACTTATGCTGATCCCTCGGTGGTGGATAGAGTCATTCAGGATGATCATGTCATAAATGGAAAGCAAGTGGAAATTAAGAGGACAATTCCAAAGGGTGCAATTGTCTCCAAGGATTTCAAAACGAAAAAGATATTTGTTGGTGGAATTCCTACATCCGTTAATGAAGATGAATTCAAAGACTTCTTTTCCAAATTTGGTGAGGTGAAAGAGCACCAAATCATGCGGGACCACTCTTCTAACCGTTCTCGTGGCTTTGGATTTATTACATTTGATTCAGAGGAGTCTGTTGACGATCTTTTGTCAAGGGGAAATAGGATTGAGTTTGCTGGAACGAAGGTGGAGATAAAGAAGGAGAACCAAAGAAACCAAACCCCCCACCTTCCACTTCCAAACGTTATAACGATTCCAGGTCTTCATATGGTGGTGGGTTTGGAGATGCATATGGTGGGTATGGAGGTGGTGGATTTGGTGCCGGTTCTTATAGAGCAGGTGGTGCCTATGGGAGCAGAGCGGGTGCATATGGTGGGTATGGTGGAAGTGAGTTTGGTGGGTACAGTGGATATGGTGCTGGTGCAATGGGAGCTTACAGAGGAGACATGTCTTATGGAGGATATTCTGGCCGTTATGGTGCTGGCTTCAGTAGAGGTTATGATATGGGAAGTGGATATGGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5527.p1 GENE.R_Transcript_5527~~R_Transcript_5527.p1 ORF type:3prime_partial len:316 (+),score=63.89,RRM_1|PF00076.18|2.8e-14,RRM_1|PF00076.18|2.2e-18,RRM_6|PF14259.2|5e-13,RRM_6|PF14259.2|9.2e-14,RRM_7|PF16367.1|0.0057,RRM_7|PF16367.1|2e-09,RRM_5|PF13893.2|0.015,RRM_5|PF13893.2|1.1e-05 R_Transcript_5527:235-1179(+)
MESREPESNYEGGPNDDVHDNSNPSAHNEDDDRSQPPTGDGASPGKIFIGGLARETTSAQFVKHFGKYGEITDSVIMKDRRTGQPRGFGFITYADPSVVDRVIQDDHVINGKQVEIKRTIPKGAIVSKDFKTKKIFVGGIPTSVNEDEFKDFFSKFGEVKEHQIMRDHSSNRSRGFGFITFDSEESVDDLLSRGNRIEFAGTKVEIKKENQRNQTPHLPLPNVITIPGLHMVVGLEMHMVGMEVVDLVPVLIEQVVPMGAERVHMVGMVEVSLVGTVDMVLVQWELTEETCLMEDILAVMVLASVEVMIWEVDMG

Click here to download the sequence:
Link to NCBI Protein BLAST