Transcript Information: R_Transcript_5529.p1


Annotated TAIR IDAT5G40490.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16225483-16227423 | Forward length=423
E-Value3.8E-163
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 173.686095674722
Replicate 271.021786632438
Replicate 372.2257293599
Condition 2: 8 Hour
Replicate 197.038968735521
Replicate 2107.79243040593
Replicate 3111.63958933014
Condition 3: 24 Hour
Replicate 1111.82087636502
Replicate 298.055702455469
Replicate 3102.7393842691


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5529.p1 GENE.R_Transcript_5529~~R_Transcript_5529.p1 ORF type:complete len:379 (+),score=102.34,RRM_1|PF00076.18|3.7e-14,RRM_1|PF00076.18|3.1e-18,RRM_6|PF14259.2|6.8e-13,RRM_6|PF14259.2|1.3e-13,RRM_7|PF16367.1|0.0077,RRM_7|PF16367.1|3.5e-09,RRM_5|PF13893.2|0.019,RRM_5|PF13893.2|1e-05 R_Transcript_5529:236-1372(+)
ATGGAGTCGAGAGAACCCGAATCCAACTACGAGGGTGGCCCAAACGACGACGTTCACGACAACAGTAATCCTTCTGCTCACAATGAAGATGACGATCGCTCTCAACCTCCTACTGGCGATGGTGCTAGTCCTGGAAAGATTTTCATAGGAGGTTTAGCTAGAGAGACAACTTCTGCGCAATTTGTCAAGCATTTCGGGAAGTATGGAGAGATCACAGATTCCGTGATAATGAAGGATAGGAGGACTGGTCAGCCTCGTGGGTTCGGATTTATAACTTATGCTGATCCCTCGGTGGTGGATAGAGTCATTCAGGATGATCATGTCATAAATGGAAAGCAAGTGGAAATTAAGAGGACAATTCCAAAGGGTGCAATTGTCTCCAAGGATTTCAAAACGAAAAAGATATTTGTTGGTGGAATTCCTACATCCGTTAATGAAGATGAATTCAAAGACTTCTTTTCCAAATTTGGTGAGGTGAAAGAGCACCAAATCATGCGGGACCACTCTTCTAACCGTTCTCGTGGCTTTGGATTTATTACATTTGATTCAGAGGAGTCTGTTGACGATCTTTTGTCAAGGGGAAATAGGATTGAGTTTGCTGGAACGAAGGTGGAGATAAAGAAGGCAGAACCAAAGAAACCAAATCCCCCTCCTTCCACTTCCAAACGTTATAACGATTCCAGGTCTTCATATGGTGGTGGGTTTGGAGATGCATATGGTGGGTATGGAGGTGGTGGATTTGGTGCCGGTTCTTATAGAGCAGGTGGTGCCTATGGGAGCAGAGCGGGTGCATATGGTGGGTATGGTGGAAGTGAGTTTGGTGGGTACAGTGGATATGGTGCTGGTGCAATGGGAGCTTACAGAGGAGACATGTCTTATGGAGGATATTCTGGCCGTTATGGTGCTGGCTTCAGTAGAGGTTATGATATGGGAAGTGGATATGGGGAGCCTGGAGACGGTTATGGAGGATATGGAGGGGGTGGAGGCGGCAGTGGTTATGGTGGTGGTTATGATTCTTCCCTTGGTGGTGGTTATGGAGGCAATAGCGGAGGTTCTATGTACGGTGGTAGCAGCAGTGGAAGAGGTGGATTTGGTGGTGCAGCTGCAAATGGACGCTATCATCCTTATGCCCGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5529.p1 GENE.R_Transcript_5529~~R_Transcript_5529.p1 ORF type:complete len:379 (+),score=102.34,RRM_1|PF00076.18|3.7e-14,RRM_1|PF00076.18|3.1e-18,RRM_6|PF14259.2|6.8e-13,RRM_6|PF14259.2|1.3e-13,RRM_7|PF16367.1|0.0077,RRM_7|PF16367.1|3.5e-09,RRM_5|PF13893.2|0.019,RRM_5|PF13893.2|1e-05 R_Transcript_5529:236-1372(+)
MESREPESNYEGGPNDDVHDNSNPSAHNEDDDRSQPPTGDGASPGKIFIGGLARETTSAQFVKHFGKYGEITDSVIMKDRRTGQPRGFGFITYADPSVVDRVIQDDHVINGKQVEIKRTIPKGAIVSKDFKTKKIFVGGIPTSVNEDEFKDFFSKFGEVKEHQIMRDHSSNRSRGFGFITFDSEESVDDLLSRGNRIEFAGTKVEIKKAEPKKPNPPPSTSKRYNDSRSSYGGGFGDAYGGYGGGGFGAGSYRAGGAYGSRAGAYGGYGGSEFGGYSGYGAGAMGAYRGDMSYGGYSGRYGAGFSRGYDMGSGYGEPGDGYGGYGGGGGGSGYGGGYDSSLGGGYGGNSGGSMYGGSSSGRGGFGGAAANGRYHPYAR*

Click here to download the sequence:
Link to NCBI Protein BLAST