Transcript Information: R_Transcript_55335.p1


Annotated TAIR IDAT1G43722.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:16496403-16497377 | Forward length=324
E-Value9.1E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6840360867764
Replicate 26.3541435470376
Replicate 36.2290251357958
Condition 2: 8 Hour
Replicate 13.382915551922
Replicate 24.8056281149916
Replicate 35.8913122188975
Condition 3: 24 Hour
Replicate 15.8904900123715
Replicate 25.6589151100823
Replicate 37.0079054479978


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55335.p1 GENE.R_Transcript_55335~~R_Transcript_55335.p1 ORF type:5prime_partial len:456 (+),score=51.85,DDE_Tnp_4|PF13359.2|9.1e-31,Plant_tran|PF04827.10|8.6e+03,Plant_tran|PF04827.10|8.3e-10,DDE_Tnp_1|PF01609.17|5.5e-07 R_Transcript_55335:3-1370(+)
TTGAATCAGGTTGGACTCTTCTTCTTCTTCACTCAGCCGACCTACCTCAAGAAGAAAGAGAAAGAAAGGGGGATCACCATAACTATCACCCAGACAGTAGGCACTTCCAAGCACCAACTACCAGGTATGGATAATAGGGATACTCAACTTAAGTTGCTTCTCTTAATGCAACAATACTTGGATGATGAGAATGACTTTTTGGATATGACGGGTTGTGCCGTAAGTCACATGGCTTTATATTATGTGAATCATATATATAAGGAACCTTGCATGACTTCTTATCAAACAGGAGAAAAATGGATGAATGAAATTTTGAATGGTCATGAAAGAAGGTGCTTTAACATGTTTAGAATAAATCAAGATACAATACATCATTTATGTACAGATTTGGAAGGCAAATATGGTTTAAAACCTTCAAATAAAATTTCCATATTGGAGAAAGTGGGTCTGTTTGTTTATGTTCTTAGTAAAGGAGCTTCCAATAGATATTCTCAAGAGCGTTTTCAACACTCTGGTGAAACGGTGAGTAGAGTTTTTAAAGAAGTTCTAACTGCTATGGATGGCCTCTCAAGAGATATACTTGTGCCAAGAGATCCCGAATTCAAGGAGATTCCATCACAAATTGCAAATGATACTAGATATATGCCACATTTTAAGGATTGCATTGGAGCTATTGATGATACTCATATATCATTGATTGTCCCAGAGGAGGATCAAATTCGATATAGAGGAAGAAAAATGATACCAACTACCAACGTTTTAGCAGCATGTGACTTTGATTTGCTATTCACATATGTTTTAACGGGATGGGAAGGATCAGCACATGATACACGCATTTTCCTGGACACAATCAACAATCCAAGTCTCAAATTTTCAAAACTGTCGGCTGGCAAATACTATTTGGTAGATAAAGGGTACCCAGAAAGACAAGGATATTTAACACCTTATCCCAAAATAAGATATCATCAATCTGAGTTTCGTAATACAAATCCAAGAGGGTCTCGAGAAATCTTCAATCGGGCACATTCATCCCTAAGAAGCTGTATTGAGAGGGCATTTGGTGTTTTAAAGGCTCGTTGGAAGATATTAGCAAAAATGCCGATATATTCACTAAGGGATCAAAATAGAATAATTTGCTCATGTTTTGCATTGCACAATTATATTAGAAGACATGCAATTGGTGACTTAGCTTTCAAGCTTATTGACGAAGATCCTGAATTCATACCTCCTGACATCATTCAAGATGTTGAAGGTTATACTGATCAATATGAGGAGAATGAAAGTATTGAAGGAACAAGAACTGAAGAAATGACCATGGTTCGTGACAATATTGCTTCAAGTTTAATGACAGCTAGACGACATTGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55335.p1 GENE.R_Transcript_55335~~R_Transcript_55335.p1 ORF type:5prime_partial len:456 (+),score=51.85,DDE_Tnp_4|PF13359.2|9.1e-31,Plant_tran|PF04827.10|8.6e+03,Plant_tran|PF04827.10|8.3e-10,DDE_Tnp_1|PF01609.17|5.5e-07 R_Transcript_55335:3-1370(+)
LNQVGLFFFFTQPTYLKKKEKERGITITITQTVGTSKHQLPGMDNRDTQLKLLLLMQQYLDDENDFLDMTGCAVSHMALYYVNHIYKEPCMTSYQTGEKWMNEILNGHERRCFNMFRINQDTIHHLCTDLEGKYGLKPSNKISILEKVGLFVYVLSKGASNRYSQERFQHSGETVSRVFKEVLTAMDGLSRDILVPRDPEFKEIPSQIANDTRYMPHFKDCIGAIDDTHISLIVPEEDQIRYRGRKMIPTTNVLAACDFDLLFTYVLTGWEGSAHDTRIFLDTINNPSLKFSKLSAGKYYLVDKGYPERQGYLTPYPKIRYHQSEFRNTNPRGSREIFNRAHSSLRSCIERAFGVLKARWKILAKMPIYSLRDQNRIICSCFALHNYIRRHAIGDLAFKLIDEDPEFIPPDIIQDVEGYTDQYEENESIEGTRTEEMTMVRDNIASSLMTARRHC*

Click here to download the sequence:
Link to NCBI Protein BLAST