Transcript Information: R_Transcript_55367.p1


Annotated TAIR IDAT4G20780.1
Annotated Gene Namecalmodulin like 42
Annotated Gene Symbol(s)CML42
Annotation TypeOrtholog
Chromosome Positionchr4:11133309-11133884 | Reverse length=191
E-Value9.5E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 179.440060502928
Replicate 284.624219503949
Replicate 386.647224820229
Condition 2: 8 Hour
Replicate 168.241041005149
Replicate 283.415811390162
Replicate 3102.28037984357
Condition 3: 24 Hour
Replicate 188.936548869062
Replicate 2101.3582984667
Replicate 385.837867946006


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55367.p1 GENE.R_Transcript_55367~~R_Transcript_55367.p1 ORF type:5prime_partial len:230 (+),score=47.14,EF-hand_6|PF13405.2|2.8e-07,EF-hand_6|PF13405.2|1.6e+03,EF-hand_6|PF13405.2|5.7e+02,EF-hand_6|PF13405.2|8.2e-08,EF-hand_6|PF13405.2|0.13,EF-hand_1|PF00036.28|4.1e-06,EF-hand_1|PF00036.28|6.4e+02,EF-hand_1|PF00036.28|1.6e+03,EF-hand_1|PF00036.28|1.6e-06,EF-hand_1|PF00036.28|5.5e-05,EF-hand_7|PF13499.2|0.00015,EF-hand_7|PF13499.2|9.5e-11,EF-hand_5|PF13202.2|1.3e-05,EF-hand_5|PF13202.2|4.7e+03,EF-hand_5|PF13202.2|2e-05,EF-hand_5|PF13202.2|0.0089,EF-hand_8|PF13833.2|0.069,EF-hand_8|PF13833.2|2.1e+02,EF-hand_8|PF13833.2|0.0025,EF-hand_8|PF13833.2|0.00015,EF-hand_9|PF14658.2|3.2,EF-hand_9|PF14658.2|1.2e+04,EF-hand_9|PF14658.2|0.012 R_Transcript_55367:2-691(+)
CATCATCAATTCTTGAGTTACAGAAACCCCAGAGAAAAAAAAAAAAAAGCAACCCAGATGGAGAAAAAAAATGGGCTTACCCAAAGTCTCAGCATAAACAAGAAGGGATCCTCCTTCAAGCTCCGTTGCTCCAGTCTTAATTCCCTGCGTTTAAGGCGGGTATTTGACCTCTTTGACAAGAATGGCGATGGCATCATCACGGTTGATGAGATCAGTCAAGCTCTTTTGCTCCTCGGCCTCGATGCTGACTTCAACGAGCTCCGTTCCATCATCACCTCCTTCATTAATCCCGGCAACAAGGGTCTCACCTTCGACGATTTCCAATCCCTTCACAAGTCTCTGAATGACACTTTCTTTGACTGTCTTGAGCGTGATTTTGACCCTCCGCAACAACCCCACAATTCAGAAGCTCCTAATCTTGATGTTTTGAATGATGAAGATTTCAAGAAACAACAGGTGGAATCAGATCTGAGCGAGGCATTCAAGGTGTTCGACGAAAATGATGATGGGTATATCTCTGCCAAGGAGCTCCAAGCTGTTCTTTCTAAGCTGGGGTTGCCTGAGGCTAATCAGGAGCTTCATCGGATTGAGCTTATGATCTCTTCCGTTGACCAGAACCATGATGGTCAAGTTGACTTCATTGAATTCAAGGAGATGATGTTGCGCTCTCTTCTTGTTCCTTCTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55367.p1 GENE.R_Transcript_55367~~R_Transcript_55367.p1 ORF type:5prime_partial len:230 (+),score=47.14,EF-hand_6|PF13405.2|2.8e-07,EF-hand_6|PF13405.2|1.6e+03,EF-hand_6|PF13405.2|5.7e+02,EF-hand_6|PF13405.2|8.2e-08,EF-hand_6|PF13405.2|0.13,EF-hand_1|PF00036.28|4.1e-06,EF-hand_1|PF00036.28|6.4e+02,EF-hand_1|PF00036.28|1.6e+03,EF-hand_1|PF00036.28|1.6e-06,EF-hand_1|PF00036.28|5.5e-05,EF-hand_7|PF13499.2|0.00015,EF-hand_7|PF13499.2|9.5e-11,EF-hand_5|PF13202.2|1.3e-05,EF-hand_5|PF13202.2|4.7e+03,EF-hand_5|PF13202.2|2e-05,EF-hand_5|PF13202.2|0.0089,EF-hand_8|PF13833.2|0.069,EF-hand_8|PF13833.2|2.1e+02,EF-hand_8|PF13833.2|0.0025,EF-hand_8|PF13833.2|0.00015,EF-hand_9|PF14658.2|3.2,EF-hand_9|PF14658.2|1.2e+04,EF-hand_9|PF14658.2|0.012 R_Transcript_55367:2-691(+)
HHQFLSYRNPREKKKKATQMEKKNGLTQSLSINKKGSSFKLRCSSLNSLRLRRVFDLFDKNGDGIITVDEISQALLLLGLDADFNELRSIITSFINPGNKGLTFDDFQSLHKSLNDTFFDCLERDFDPPQQPHNSEAPNLDVLNDEDFKKQQVESDLSEAFKVFDENDDGYISAKELQAVLSKLGLPEANQELHRIELMISSVDQNHDGQVDFIEFKEMMLRSLLVPST*

Click here to download the sequence:
Link to NCBI Protein BLAST