Transcript Information: R_Transcript_55551.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value1E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2353883589508
Replicate 29.8717689308132
Replicate 37.7631425743524
Condition 2: 8 Hour
Replicate 16.8373417633119
Replicate 26.4574384314641
Replicate 36.7147962915513
Condition 3: 24 Hour
Replicate 110.684421024827
Replicate 213.58056514026
Replicate 310.917733364109


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55551.p1 GENE.R_Transcript_55551~~R_Transcript_55551.p1 ORF type:complete len:419 (+),score=21.01,LRR_8|PF13855.2|4.8e+02,LRR_8|PF13855.2|3.6e-09,LRR_8|PF13855.2|0.094,LRR_8|PF13855.2|2.3e-05,LRR_8|PF13855.2|6.6,LRR_8|PF13855.2|1.8,LRR_4|PF12799.3|3.2,LRR_4|PF12799.3|38,LRR_4|PF12799.3|6.2e-07,LRR_4|PF12799.3|54,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|1.5e+02,LRR_4|PF12799.3|2.2e+02,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|44,LRR_1|PF00560.29|0.0077,LRR_1|PF00560.29|24,LRR_1|PF00560.29|54,LRR_1|PF00560.29|5.4e+03,LRR_1|PF00560.29|1.7,LRR_1|PF00560.29|6.8e+02,LRR_1|PF00560.29|1.5e+03,LRR_1|PF00560.29|8.1e+02,LRR_1|PF00560.29|1e+04 R_Transcript_55551:195-1451(+)
ATGAATCACAGCCATTTCCAGAATTCAATACTTTCCCTTCTTCTCCTCTCCTTGTTCAACCACATAGTTTACTCAGAGCTTTGCAATCCTTACGACAAAAACATTCTGCTACAAATCAAAGCCCAGTACCCCGATCCATTGATATCATGGAACCCCGACCGAGACTGCTGCACAGAATGGTGGTACAACCCCTACACCAGCACCTTATTTGATTTTGGGTGTGACAATCAAGGCCACGTCACCACCATTAGGATGAACTGGGTTCAAGATATTCCAAGTGACTTTCTGCTAGCACTTGGCCAGCTTCCGAACCTCGAGTCAATTTCACTAGGTGATTTCTTTGACATCCCAACACAAATCCCTCCAGAAATTTGCACCAAATTAATCAACCTAAAGTCCTTGTCTATTGTAAGAAGCAACCTTCATGGTTCAATCCCGGATTGTTTAGGCCAGCTTCGAAATCTAAACTACCTCGATCTCTCATACAACAGCCTTACTGGCGAAATCCCACCTAGCCTCAGCAATCTCCCTAACCTCCAGATTCTTAACCTCTATAAGAACCAGCTGTACGGAACCATACCTGATTTTTCAGGTGCAAGTGCAGGACTGTACTCTCTTAGTCTTGGCTACAACAGCTTTTCTGGCGCAATCCCGGACCACCTTGGTCTCCTCTCTAGCCTCAGCACTCTCATCCTTGCAGCGAACCAGTTCAACGGCTCAATCCCTTCGTTTTTGGGACATATGGACAACCTCTTATGGCTAGATCTCTCTTCGAATCAGCTCACCGGCTCAATCCCGGAGAGTTTAGGCCAGTTAGTGAAGCCCAACAGCTTAGCATTAACACTTCTATTACAGAACAATCAGCTGTCAGGTACAGTCCCAGAGTCGCTTGGGCAGCTGAACTTTTTTGAGCTGAATCTGTCCAACAATAAACTTAAGGGAGATGCATTCTTTTTGTTTGGAAGCAACCAAACTCGGGGTCGAACAATTGATATTAGCAAAAACCATTTCAGGTTCAATTTCTCGGAATCGAATCCCCCTCAGGGGTTGTTGAATCTCAACATAAGCCATAACAAGATATATGGGTCCTTCCCGATTACCTTAGGCCGGGTGCCATATTTTGAGTCGTTTGATGTGAGTTATAATAAGCTCAGTGGACCCATCCCATGTGACCAAGGTTGGGAAAGATACAACAAGATCTACTTTTCTCATAATAAGTGCCTTTGTGGCCCTCCATTAGCCGCTTGCACTAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55551.p1 GENE.R_Transcript_55551~~R_Transcript_55551.p1 ORF type:complete len:419 (+),score=21.01,LRR_8|PF13855.2|4.8e+02,LRR_8|PF13855.2|3.6e-09,LRR_8|PF13855.2|0.094,LRR_8|PF13855.2|2.3e-05,LRR_8|PF13855.2|6.6,LRR_8|PF13855.2|1.8,LRR_4|PF12799.3|3.2,LRR_4|PF12799.3|38,LRR_4|PF12799.3|6.2e-07,LRR_4|PF12799.3|54,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|1.5e+02,LRR_4|PF12799.3|2.2e+02,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|44,LRR_1|PF00560.29|0.0077,LRR_1|PF00560.29|24,LRR_1|PF00560.29|54,LRR_1|PF00560.29|5.4e+03,LRR_1|PF00560.29|1.7,LRR_1|PF00560.29|6.8e+02,LRR_1|PF00560.29|1.5e+03,LRR_1|PF00560.29|8.1e+02,LRR_1|PF00560.29|1e+04 R_Transcript_55551:195-1451(+)
MNHSHFQNSILSLLLLSLFNHIVYSELCNPYDKNILLQIKAQYPDPLISWNPDRDCCTEWWYNPYTSTLFDFGCDNQGHVTTIRMNWVQDIPSDFLLALGQLPNLESISLGDFFDIPTQIPPEICTKLINLKSLSIVRSNLHGSIPDCLGQLRNLNYLDLSYNSLTGEIPPSLSNLPNLQILNLYKNQLYGTIPDFSGASAGLYSLSLGYNSFSGAIPDHLGLLSSLSTLILAANQFNGSIPSFLGHMDNLLWLDLSSNQLTGSIPESLGQLVKPNSLALTLLLQNNQLSGTVPESLGQLNFFELNLSNNKLKGDAFFLFGSNQTRGRTIDISKNHFRFNFSESNPPQGLLNLNISHNKIYGSFPITLGRVPYFESFDVSYNKLSGPIPCDQGWERYNKIYFSHNKCLCGPPLAACTK*

Click here to download the sequence:
Link to NCBI Protein BLAST