Transcript Information: R_Transcript_55627.p2


Annotated TAIR IDAT3G14120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4677993-4685455 | Forward length=1101
E-Value5.8E-212
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.660778388944
Replicate 213.627619931931
Replicate 313.027298971173
Condition 2: 8 Hour
Replicate 110.042828329314
Replicate 214.371475855646
Replicate 312.894167375159
Condition 3: 24 Hour
Replicate 117.133416387695
Replicate 215.434018377973
Replicate 313.743442477819


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55627.p2 GENE.R_Transcript_55627~~R_Transcript_55627.p2 ORF type:complete len:473 (+),score=93.64,Nup84_Nup100|PF04121.9|0.072,Nup84_Nup100|PF04121.9|0.0025 R_Transcript_55627:2261-3679(+)
ATGCTAGGTATTTCTCCACTCAGCTGTTCTTGTTTTTGTATAATTTCTCCTCGTCTCATTCTCTATTCCAATTTTGAACTTGTTAATAGTGTACATGTTAAGTACAAACTGTTTCTATCTGCCATGGAGTACTTGCCATTTTCACCTGGAGATGAATCAAGAGGCAGCTTCGAGGAAATCATTGAGAGGGTTTTGACAAGGTCACGTGAACCCAAACATGGCAAGTATGATAACTCTGCAGATGTTGCAGAGCAGCATCGGTTGCAATCGCTTGATAAAGCTATGGTCATACAGTGGCTTTGCTTTACACCTCCTTCCACAGTCGACGAAGTTGAAGCTGTTAGTGCCAGGCTGCTTCTCCGAGCCCTTCTGCATAGTAATATTCTCTTCAGAGAATTTGCTGTGATATCCATGTGGAGGGTGCCAGCAATGCCAATAGGTGCCCACAAACTGCTTAGTTTCCTTGCAGAACCCCTGAAGCAACCCACAGAAAATCTTCTATCTTTCGAGGATCATGATGTTTCTGACTATCTGACGGAGTTCAGAGATTGGAGTGAATATTACTCCTGTGATGCTACATATCGCAACTGGCTTCAAATTGAATTGGATAATGCAGAAATTTCTTCCTCTGAGCTCTCCGTGGAAGAAAAACAACGAGCTATTTCAGCAGGAAAAGAGACACTCACTTCTTCACTGTTACTCCTACTGAGAAAGGAAAATCCTTGGTTGGTTCCGATTGAAGATAAAATCTATAACACAGCTGAAACTATGTTCCTTGAACTGCATGCCACAGCAATACTATGTTTGCCTTCTGGTGAATGCATGTCTCCAGATGCCACCTTATGTGCAACCTTGATGAGTGCCCTCTACTCTTCAGTGACAGAGGAAGTTGTATTAAATCGACAATTAACGGTGGATGTGAAGGTTCCCCCCAAGGATAATTTCTGTGTTGAGGTTACTCTCCGTTGCTTGGCAGTGGAAGGTGATGGACTTGGGCCTCGTGAACATAACGATGGTGGCGTTCTTGCCAGTGTGATGGCAGCAGGCTTTAAAGGTGAATTTTCTCGATTTCAAGCTGGTGTAACCATGGAGATCTCGCGATTTGATGCTTGGTATTCTACTGCTGAAGGCTCATTTGAAGAGCCAGCGACATACATTGTGCGTGGTCTTTGTAGGAGGTGTTGCCTTCCTGAGCTAATTTTACGCTGCATGCAGGTGTCTGTCTCATTGCTGGAGTTGGGTGAAGTTTTGGAAAGGCATAATGAGTTGATTGAACTAGTTGCTTGTCCCGATACAGGATTTCTTCATTTATTTAGCCAACAGCAACTGCAGGAATTCTTGCTGTTTGAAAGGGAATACTCAATATGCTTGATGGAGCTAGAGGAGCAACGTTTTAGGAGCTCTCTGGAGTTGTACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55627.p2 GENE.R_Transcript_55627~~R_Transcript_55627.p2 ORF type:complete len:473 (+),score=93.64,Nup84_Nup100|PF04121.9|0.072,Nup84_Nup100|PF04121.9|0.0025 R_Transcript_55627:2261-3679(+)
MLGISPLSCSCFCIISPRLILYSNFELVNSVHVKYKLFLSAMEYLPFSPGDESRGSFEEIIERVLTRSREPKHGKYDNSADVAEQHRLQSLDKAMVIQWLCFTPPSTVDEVEAVSARLLLRALLHSNILFREFAVISMWRVPAMPIGAHKLLSFLAEPLKQPTENLLSFEDHDVSDYLTEFRDWSEYYSCDATYRNWLQIELDNAEISSSELSVEEKQRAISAGKETLTSSLLLLLRKENPWLVPIEDKIYNTAETMFLELHATAILCLPSGECMSPDATLCATLMSALYSSVTEEVVLNRQLTVDVKVPPKDNFCVEVTLRCLAVEGDGLGPREHNDGGVLASVMAAGFKGEFSRFQAGVTMEISRFDAWYSTAEGSFEEPATYIVRGLCRRCCLPELILRCMQVSVSLLELGEVLERHNELIELVACPDTGFLHLFSQQQLQEFLLFEREYSICLMELEEQRFRSSLELY*

Click here to download the sequence:
Link to NCBI Protein BLAST