Transcript Information: R_Transcript_55628.p1


Annotated TAIR IDAT3G14120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4677993-4685455 | Forward length=1101
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.185541526252
Replicate 25.71565955777
Replicate 310.011092727207
Condition 2: 8 Hour
Replicate 19.6129692015111
Replicate 29.4205567016106
Replicate 313.227145887264
Condition 3: 24 Hour
Replicate 114.157314457084
Replicate 211.027629445289
Replicate 313.639282642854


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55628.p1 GENE.R_Transcript_55628~~R_Transcript_55628.p1 ORF type:complete len:1080 (+),score=228.54,Nup84_Nup100|PF04121.9|2.2e-65,Nup84_Nup100|PF04121.9|0.0047 R_Transcript_55628:358-3597(+)
ATGGAGGTTGATATGGAGACTTCTCCTAGCTATTTCGATCCTCAAGACCTCAGTATCAGAGAGCAGTATCGTCGTTACGGGAAAAGGCAGTCAGGTTCTAGCATTTCACCACACCAACAAAGTCCATCTTCTAAATATGGTGAAGGAAGAAGATCCAACACTGCTTTGTTTTTGGAAGACATCAAACAAGAGGTTGAGAGCCTGGATTATCGAGAAGGAACACCGTCAAGGACACATTCTGCTTACAGACGAAGGTCCCCTGATAGTCGAGTCATATCGGAATTTGATGGAGCTGATTTATCTCGTCGGGGTGGAAGCTATTCGTTAAAAGCATGCAAGATTGAGGAGGATGAATCGGATTCTGGGGAAACAATGTTTTCATTGTTTGCATCTCTTCTAGATTCTGCCCGTCAAGGCCTTATATCAGTTCCTGAACTAATCTTACAATTCGAGAAATCATGTCGTGATGTTTCAGAATCTATAAGATATGGTTCCAGTGAGAGGCATCGGATTGTAGAGGACAGATTGATGCGACAAAAAGCTCAGTTCTTGCTTGATGAAGCTGCTTCTTGGTCTCTTCTGTGGTATATCTATGGAAAAGGAAGTGAAGAAATACCTGAAGATCTTATTTTGGCGCCAACAACCTCACATTTGGAGGCTTGCCAATTTGTGACTACAAGCCTCGCAGCGCAATTGTGCCTCCGAATTGTTCAGTGGTTAGAAGGACTGGCGTCTAAAGCCCTGGAATCAGAGAGCAAGGTGCGTGGATCTCATGTTGGGACATACCTCCCCAGCTCTGGTATTTGGCATAATACCCAACGGCAACTTAAGAAGAATGATAAAAATCTGAAGACTGTTAAACATTTGGATTTTGATGCTCCTACTAGAGAAAATGCTCTGCCACTCCTAGACGATAGAAAACAAGATGAATCTCTCCTGGAAGATGTTTGGACTCTATTACGTGCTGGGAGACTGGAGGAAGCATGTGACCTATGCAGATCTGCAGGACAGCCATGGAGGGCAGCGAGTTTATGCCCTTTTGGAGGGATGGACCTAGTCCCATCTATTGAAGCCTTGTCGAAGAATGGAAAGAACAGAACAATGCAAGCCATTGAGCTAGAAAGTGGAGTTGGTCGACAATGGCGCCTTTGGAAATGGGCCTCTTATTCTGCATCAGAGAGGATTGCAGAGCAGGGTGGTGGAAAGTATGAAGCAGCAGTTTATGCAGCTCAATGTAGTAACTTAAAGCGCATGCTTCCTATCTGCACGGACTGGGAGTCAGCATGTTGGGCAATGGCCAAGTCATGGCTTGATGTCCAGATGGACTTCGCTTGTTTGCAACCTGGAAGAGCAGAGCTCTTGAAGAATTATGAAGAGACTATTGATGCAAGTCCTGGACAAAGAGTTAGCACAAATGGGTCTTCAGTAAGGCCGGAAAATTGGCCTCTGCAAGTTTTGAACCAGCAACCACGAAATCTTTCTTCTCTTCTTCAAAAACTTCACTCCTGTGACATGGTTCATGAAGCTGTTACTCGTGGATGCAAGGAGCAACATCGTCAGATTGAGATGAACCTGATGTCTGGAGATATACCACATTTATTGGACCTTGTATGGTCATGGATATCACCTTCAGATGAAGATCAAAATAAATTCAGGCCTCACGGAGATCCCCACATGATTCGTTTTGGAGCACATCTAGTTTTGGTGCTTAGATATTTGCTTGGAGATGAAGTGAAGGATGTCTTCAAGGAGAAGATAATGAATGGTGGTGATCTCATTCTCCATATCTATGCTATGTACCTGTTTACGCAACAACACGAGGAGCTGGTAGGAATTTATGCTTCACACCTTGCACATCATCGCTGCATTGACCTCTTTGTGCATATGATGGAGCTACGATTGAATGCTAGTGTACATGTTAAGTACAAACTGTTTCTATCTGCCATGGAGTACTTGCCATTTTCACCTGGAGATGAATCAAGAGGCAGCTTCGAGGAAATCATTGAGAGGGTTTTGACAAGGTCACGTGAACCCAAACATGGCAAGTATGATAACTCTGCAGATGTTGCAGAGCAGCATCGGTTGCAATCGCTTGATAAAGCTATGGTCATACAGTGGCTTTGCTTTACACCTCCTTCCACAGTCGACGAAGTTGAAGCTGTTAGTGCCAGGCTGCTTCTCCGAGCCCTTCTGCATAGTAATATTCTCTTCAGAGAATTTGCTGTGATATCCATGTGGAGGGTGCCAGCAATGCCAATAGGTGCCCACAAACTGCTTAGTTTCCTTGCAGAACCCCTGAAGCAACCCACAGAAAATCTTCTATCTTTCGAGGATCATGATGTTTCTGACTATCTGACGGAGTTCAGAGATTGGAGTGAATATTACTCCTGTGATGCTACATATCGCAACTGGCTTCAAATTGAATTGGATAATGCAGAAATTTCTTCCTCTGAGCTCTCCGTGGAAGAAAAACAACGAGCTATTTCAGCAGGAAAAGAGACACTCACTTCTTCACTGTTACTCCTACTGAGAAAGGAAAATCCTTGGTTGGTTCCGATTGAAGATAAAATCTATAACACAGCTGAAACTATGTTCCTTGAACTGCATGCCACAGCAATACTATGTTTGCCTTCTGGTGAATGCATGTCTCCAGATGCCACCTTATGTGCAACCTTGATGAGTGCCCTCTACTCTTCAGTGACAGAGGAAGTTGTATTAAATCGACAATTAACGGTGGATGTGAAGGTTCCCCCCAAGGATAATTTCTGTGTTGAGGTTACTCTCCGTTGCTTGGCAGTGGAAGGTGATGGACTTGGGCCTCGTGAACATAACGATGGTGGCGTTCTTGCCAGTGTGATGGCAGCAGGCTTTAAAGGTGAATTTTCTCGATTTCAAGCTGGTGTAACCATGGAGATCTCGCGATTTGATGCTTGGTATTCTACTGCTGAAGGCTCATTTGAAGAGCCAGCGACATACATTGTGCGTGGTCTTTGTAGGAGGTGTTGCCTTCCTGAGCTAATTTTACGCTGCATGCAGGTGTCTGTCTCATTGCTGGAGTTGGGTGAAGTTTTGGAAAGGCATAATGAGTTGATTGAACTAGTTGCTTGTCCCGATACAGGATTTCTTCATTTATTTAGCCAACAGCAACTGCAGGAATTCTTGATGTTTGAAAGGGAGTACTCAATATGCTTGATGGAGCTTGAGGAGGAACGTTTTAGGACCTCTCAGGAGTTGTACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55628.p1 GENE.R_Transcript_55628~~R_Transcript_55628.p1 ORF type:complete len:1080 (+),score=228.54,Nup84_Nup100|PF04121.9|2.2e-65,Nup84_Nup100|PF04121.9|0.0047 R_Transcript_55628:358-3597(+)
MEVDMETSPSYFDPQDLSIREQYRRYGKRQSGSSISPHQQSPSSKYGEGRRSNTALFLEDIKQEVESLDYREGTPSRTHSAYRRRSPDSRVISEFDGADLSRRGGSYSLKACKIEEDESDSGETMFSLFASLLDSARQGLISVPELILQFEKSCRDVSESIRYGSSERHRIVEDRLMRQKAQFLLDEAASWSLLWYIYGKGSEEIPEDLILAPTTSHLEACQFVTTSLAAQLCLRIVQWLEGLASKALESESKVRGSHVGTYLPSSGIWHNTQRQLKKNDKNLKTVKHLDFDAPTRENALPLLDDRKQDESLLEDVWTLLRAGRLEEACDLCRSAGQPWRAASLCPFGGMDLVPSIEALSKNGKNRTMQAIELESGVGRQWRLWKWASYSASERIAEQGGGKYEAAVYAAQCSNLKRMLPICTDWESACWAMAKSWLDVQMDFACLQPGRAELLKNYEETIDASPGQRVSTNGSSVRPENWPLQVLNQQPRNLSSLLQKLHSCDMVHEAVTRGCKEQHRQIEMNLMSGDIPHLLDLVWSWISPSDEDQNKFRPHGDPHMIRFGAHLVLVLRYLLGDEVKDVFKEKIMNGGDLILHIYAMYLFTQQHEELVGIYASHLAHHRCIDLFVHMMELRLNASVHVKYKLFLSAMEYLPFSPGDESRGSFEEIIERVLTRSREPKHGKYDNSADVAEQHRLQSLDKAMVIQWLCFTPPSTVDEVEAVSARLLLRALLHSNILFREFAVISMWRVPAMPIGAHKLLSFLAEPLKQPTENLLSFEDHDVSDYLTEFRDWSEYYSCDATYRNWLQIELDNAEISSSELSVEEKQRAISAGKETLTSSLLLLLRKENPWLVPIEDKIYNTAETMFLELHATAILCLPSGECMSPDATLCATLMSALYSSVTEEVVLNRQLTVDVKVPPKDNFCVEVTLRCLAVEGDGLGPREHNDGGVLASVMAAGFKGEFSRFQAGVTMEISRFDAWYSTAEGSFEEPATYIVRGLCRRCCLPELILRCMQVSVSLLELGEVLERHNELIELVACPDTGFLHLFSQQQLQEFLMFEREYSICLMELEEERFRTSQELY*

Click here to download the sequence:
Link to NCBI Protein BLAST