Transcript Information: R_Transcript_55813.p1


Annotated TAIR IDAT5G51080.1
Annotated Gene NameRNase H family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20769022-20770675 | Reverse length=322
E-Value5.4E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.614512600912
Replicate 23.5976806893095
Replicate 34.2467547228822
Condition 2: 8 Hour
Replicate 14.7458558465166
Replicate 22.8265159630712
Replicate 34.6908656659427
Condition 3: 24 Hour
Replicate 18.7059100442136
Replicate 26.1952974411734
Replicate 36.8860194520576


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55813.p1 GENE.R_Transcript_55813~~R_Transcript_55813.p1 ORF type:complete len:356 (+),score=80.64,RVT_3|PF13456.2|4.5e-21,RNase_H|PF00075.20|8.5e-08,Cauli_VI|PF01693.12|3.9e-06 R_Transcript_55813:252-1319(+)
ATGAACAGTTTGTTGTACCAAATATCTTCTTACTCAGCCTCACTTATACTCAAATCAGCTCGCTCAATTGGGTTCAAGAAGGGTACTTGTACTTCCTTATATGGGCATTGCTCTTTAAACCTATCTTTGAAAAGGTATACTAATTATCCAAGTCTAAAATCCACTCATCTGGGTTCATCTGTATTGGTAAGGTTTGGGGTTGTTCAGTGCTATTCTTCTTCTTCTTCTTCTTCCAAAAGGAGCTCCACCCGGAAAAAGAAATCGGGTCCTGACCCAGTCATGAAAGATGAAAAGGAGGCTTTTTTCGTGGTTCGGAAAGGGGATGTTGTTGGGGTTTATAAGAGCTTGAGTGAATGCCAAGCTCAAGTTGGCTCTTCGATAAGTGATCCTCCAGCTAGTGTATATAAAGGATATTCTTTGCCTAAGGATGCCGAGGAATATCTCACCTCCCGTGGTCTGCAGAATGCTCTGTACACAATTAAAGCTTCTGATCTGAAGGATGATCTTTTTGGCACACTTGAGCCCTGTCCTTTCCAGGAACCATCATCTTCCAAAGGTCAAACTTCGAGCATAAACCTTCCACAGAAGAGGCCACATGATGTACTAGAATCAGATAATGTGCACTCTTGTATTCTTGAGTTTGATGGTGCTTCAAAAGGAAATCCTGGCCAAGCTGGTGCTGGAGCTGTGCTTCGAACCCTAAATGGAAGCTTGATTTGCAGTATACGTCAAGGCTTGGGAATTGCCACCAACAATGTTGCAGAATATCGAGCTGTTATTTTAGGGTTAAGGAAAGCTCTTGACATGGGTTATACAAGTATTCAAGCAAAAGGTGACAGCAAGCTTGTCTGTATGCAGATGCAGGGTCTATGGAGGGTAAAAAATCAGAACATGTCTGATTTGCATGCAGAGGCAAAGAAACTGATGGACAGGTTTTCTTCTTTTCAGATCAGTCTTGTTTTGAGGGAATATAATTCTGATGCTGATGCACAAGCAAATTTGGCAATATCTTTAGCTGATGGTCAAGTACAGGAGGATTTGTGTTTGCCGACTTCTGCCAAATGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55813.p1 GENE.R_Transcript_55813~~R_Transcript_55813.p1 ORF type:complete len:356 (+),score=80.64,RVT_3|PF13456.2|4.5e-21,RNase_H|PF00075.20|8.5e-08,Cauli_VI|PF01693.12|3.9e-06 R_Transcript_55813:252-1319(+)
MNSLLYQISSYSASLILKSARSIGFKKGTCTSLYGHCSLNLSLKRYTNYPSLKSTHLGSSVLVRFGVVQCYSSSSSSSKRSSTRKKKSGPDPVMKDEKEAFFVVRKGDVVGVYKSLSECQAQVGSSISDPPASVYKGYSLPKDAEEYLTSRGLQNALYTIKASDLKDDLFGTLEPCPFQEPSSSKGQTSSINLPQKRPHDVLESDNVHSCILEFDGASKGNPGQAGAGAVLRTLNGSLICSIRQGLGIATNNVAEYRAVILGLRKALDMGYTSIQAKGDSKLVCMQMQGLWRVKNQNMSDLHAEAKKLMDRFSSFQISLVLREYNSDADAQANLAISLADGQVQEDLCLPTSAKC*

Click here to download the sequence:
Link to NCBI Protein BLAST