Transcript Information: R_Transcript_55887.p1


Annotated TAIR IDAT4G20050.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)QRT3
Annotation TypeOrtholog
Chromosome Positionchr4:10849911-10852090 | Reverse length=481
E-Value1.8E-192
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.579187377367
Replicate 210.949242599905
Replicate 312.124464626088
Condition 2: 8 Hour
Replicate 115.447137456954
Replicate 220.133528376536
Replicate 333.396127352353
Condition 3: 24 Hour
Replicate 130.266640388087
Replicate 225.544469769751
Replicate 329.967345674834


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55887.p1 GENE.R_Transcript_55887~~R_Transcript_55887.p1 ORF type:complete len:512 (+),score=66.62,Pectate_lyase_3|PF12708.3|1.2e-07 R_Transcript_55887:472-2007(+)
ATGAAGGGCTCATTAATGGCAACAAAAGCTCTTCTTCTTCTCTTTAATTTCCTCTTGATTATGGAATTAGTGGGTCATCTTATGGTCATTGAAGTTTATGGAGAGAATTCTTATGATATTGGTGGTGCTGATCATATTCTAAGGAAAATGCAGGCTTTCAAAGCCTCTCTTGTTAAACGTCAAGCTCAATCTATTGCTGCTCCTCCCAATACGTTGATTTCTCCCTCTCCTTGCTTTTTGGCTCCTTCTTCGGCTAGTGCACGTGTGTATCACGTGACGTCATACGGGGCGGATCCGACAGGGAAAACGGACAGCACAGAGGCGCTTCTAAAGGTGTTTTCAGACGTGACAAACACTCCAAGCAATGGGTACTTGATGGATGGGATTAGTAATTTGGGTGCCGTAGAGATCAATCTTGATGGTGGAGATTACTTGATTAGCCGCCCTCTTCAATTTCCGACTGCCCGTATTGGAAACATTCTGATACATGGAGGGACGCTACGGGCATCAGATAATTTTCCTACAGATGGTTATCTTGTAGAACTTGCATCAGCATCTTCATCATCAGCTCAAAAACAAGACATTACAGATACTGTGGACCAAAGTCTTAGCTCCTCTTCATCCTCTTACAATTTTGAGTACATAACCTTTAGGGACCTAATGCTGGATTGCAACTTCAGAGGTGGTGGCATTTCAATAATCAACTCCCTTAGAACTGGCATTGACAATTGTTACATTGCACATTTTACTACAGAAGGGATTCGAGTCCAATCCGGGCATGAAACCATAATTCGAAGCTCATTCATAGGCCAACACATAACTGCTGGTAACGATCCAGGCGAGAGAAATTTCTCCGGCACAGGGATCTCCCTTATGGGCAACGACAATGTTGTTAGTGATGTGGTCATTTTCTCAGCTGATACAGGAATAATGGTTTCAGGCCAAGCCAATCTTATTTCCGGAATTCATTGCTATAACAAAGCTGTTGGTTTCGGTGGCAAGGGGATATATCTGAAGCTACCTGGTTTGACTCAGACCAGGATCGTAAACTCGTATCTTGATTACACAAGTATAGTTGCAGAGGACCCTGTTCAGCTCATAATTTCCAACAATTTCTTCTTAGGAGACGCCTTCGTTTCATTGAAATCGGTCAAGGGAATCACAAATGGAGTGAACATTGTTGACAACATGTTTTCTGGGTCTGGAAAAGGGGTCGACATTGTGCAGCTAGATGGGTCATTTGGTAATGTTGATCAAGTTCTTGTTGACAGAAACAGTGTCAATGGGATGAATAGAAAGGCCACTATAGCGAGAAGCGAAGTACAAGGGAATGGGAGTTCCTGGACAGCAGATTTTAATGGAGTTCTTTTGTTCCCAAACCTCATAAAACATGTGAAATACACACTAAGTGCCACGGGTGATTCTTTCCCCATGTATGCTTTGAGAAATGTTTCGCATAATCGAGTGTTGATCCAGTCGAATTTGGCTGTTCCTACCAGTGTGTATGTTATGGTTGATCAAGGATTCGGAAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55887.p1 GENE.R_Transcript_55887~~R_Transcript_55887.p1 ORF type:complete len:512 (+),score=66.62,Pectate_lyase_3|PF12708.3|1.2e-07 R_Transcript_55887:472-2007(+)
MKGSLMATKALLLLFNFLLIMELVGHLMVIEVYGENSYDIGGADHILRKMQAFKASLVKRQAQSIAAPPNTLISPSPCFLAPSSASARVYHVTSYGADPTGKTDSTEALLKVFSDVTNTPSNGYLMDGISNLGAVEINLDGGDYLISRPLQFPTARIGNILIHGGTLRASDNFPTDGYLVELASASSSSAQKQDITDTVDQSLSSSSSSYNFEYITFRDLMLDCNFRGGGISIINSLRTGIDNCYIAHFTTEGIRVQSGHETIIRSSFIGQHITAGNDPGERNFSGTGISLMGNDNVVSDVVIFSADTGIMVSGQANLISGIHCYNKAVGFGGKGIYLKLPGLTQTRIVNSYLDYTSIVAEDPVQLIISNNFFLGDAFVSLKSVKGITNGVNIVDNMFSGSGKGVDIVQLDGSFGNVDQVLVDRNSVNGMNRKATIARSEVQGNGSSWTADFNGVLLFPNLIKHVKYTLSATGDSFPMYALRNVSHNRVLIQSNLAVPTSVYVMVDQGFGS*

Click here to download the sequence:
Link to NCBI Protein BLAST