Transcript Information: R_Transcript_55901.p1


Annotated TAIR IDAT2G22600.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9596617-9599050 | Forward length=632
E-Value7.1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.849373453363
Replicate 210.86015538774
Replicate 312.054370159295
Condition 2: 8 Hour
Replicate 111.270105755329
Replicate 213.476873313578
Replicate 314.39610497479
Condition 3: 24 Hour
Replicate 114.249673451678
Replicate 213.028143932365
Replicate 315.094968749584


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55901.p1 GENE.R_Transcript_55901~~R_Transcript_55901.p1 ORF type:complete len:667 (+),score=111.69,KH_1|PF00013.25|8.1e-10,KH_1|PF00013.25|3.1e-14,KH_1|PF00013.25|5.3e-10,KH_1|PF00013.25|2.7e-13,KH_1|PF00013.25|3.6e-12,KH_3|PF13014.2|9.5e-07,KH_3|PF13014.2|4.3e-08,KH_3|PF13014.2|8.3e-09,KH_3|PF13014.2|8.5e-09,KH_3|PF13014.2|2.6e-05,KH_2|PF07650.13|0.34,KH_2|PF07650.13|6.6e-06,KH_2|PF07650.13|1.6,KH_2|PF07650.13|5.7,KH_2|PF07650.13|56,KH_4|PF13083.2|1.9e+02,KH_4|PF13083.2|0.024,KH_4|PF13083.2|0.0084,KH_4|PF13083.2|1.7e+02,KH_4|PF13083.2|56 R_Transcript_55901:319-2319(+)
ATGGCCAATTCATTTCTCTTTCCTCCATCCAAACGCCCGATGTCAGACCCACTCACTCCTCTCCCCTCTCTCTCCAACGGCACTTCCACCACTGCCAAACGCCTCAAACAGCCCCCACACCCACTCCAAATCCCCGCCGGCCACGTGTCCCTCCGCATGCTCTGCCACGCGTCCCTCATTGGTGCCTTCATCGGAAAATCCGGTTCCTCAATCAAACAACTTCAACTCGATACCGGGTCCAAGATCCGGGTCGAGGACTCCCTCCAACCCGGCTCCGACCACCGCGTCATCCTCATTGTCGCCCCATCTACTCGTTTCAAGAAGCTTCTATTTGGTAACGTCGAGTATGACGTCAGTGCCGCCCAGGATGCTGCTGTTAGGGTTTTCGACAAGGTTCTGGAAGTTTCCGCCGAAATTAACGGGACGGTGTCGTTTAGGTTTTTGATTGATGAAACTCAGGCTGGGTCGGTGATAGGAAAGGGTGGGAAAGTTATTGAGAAGATGAGAAAAGAGAGTGGTGCTAAAATTAGGGTTTTGTTAGGTGATCACTTGCCCCCTGATGTTTCTTCCCCTGATGAAGTTGTTGAGATTGAGGGGGATGCATTGGCGGTTAAGAAAGCACTCATTGGTGTGTCTGGTCGCTTGCAAGAATGTCCACAAGGAGAAAAACCAAGTATTAAAGATAGCAGACCTTTGCAGTCAACTTCGCAGCCAACTGTACCTCTGTCTGATTTTCTTGTTGACCCTCCTCTGCAGCAGATGAGCAGACCTTTTCAGTCAACTGCACAGCCACCTGTACCTATACCTGCACCTGAGTTTCATGTTGTCCCTCCTCTGCAGCGGATGCCAATATCTACAGCAACTACTTCATCTAGTCCTACTTTGTCAGGGAGGCCTCTGTTGTTTGAGAATGATAGGTTCACAGCATCAGATACAAAATTGCAAAACCAAGAAGTAGTTTTCAAAATTCTTTGTTTGAATGATAGAGTAGGTGGCGTCATTGGAAGAGGAGGGTCCATCGTAAGAGCACTTCAGGACGAGACGGGGGCTAACATAAGTATTGGGGCTACTTTGTCCAATTGTGACGAACGACTAATCACTATTACTTCAAAGGAGGATGTGGAGTCAAGGTATTCTCCTGCGCAACGAGCAGCAGTCCTGGTTTTTTCTAGGTCTGTTGAGGCTGGTGTTGAGAAGGTACTGGAAACTAACATGAGCAAAGGTTCCTCTGTCTCCGCACGGCTTTTGGTACCGGCCAACCAAGTTGGTTGTTTGCTTGGTAAAGGAGGGGTTATAGTTTCTCAGATGAGAAAGGCAACTGGCGCCAGCATAAGCATTATACGAGATCAGGTGCCGAAGTGTGCTTCAGAGGATGATGAAGTGGTTGAGATATCAGGCCAGTTTGTAAATGTACAAGATGCTTTATATCAGGTCACCAACAGACTTCGGAATAATCTTCTCCCCAGTAAACTGATGAATGATACCGGAAGTTGGACTAATAACTCACTAAGATTGGATGGAAGAGTTGGAGATACCACACTTGTTGGTTCGCACCAATCATTGGGCCCATCTCAGTCCATTGATCGACAAGCTACTATAAGGCAGGGTTTGGACCCTCTATTGCGTCCTCATAGATTGGACAGTTCTCCTTTGGGGATCCGGACTTCAGAGGTAGCGGCTGGAGTAAATTCAAAGACTTCTGTGAATCTTGGCGGAGGTTTCTCCACCAATGGTGCAGTAGAGCTTGTCAGCTCTAAAAGACCGGCTATTGTGACAAATACAACAGTAGAGATTTTAGTCCCTGAAGATGCTGTTAGCTCTGTTTACGGCGAGAATGGGAGCAATCTAGCCCGTATAAGACAGATATCTGGTGCAAAGGTGGCTGTCCATGAGGCTCGTCCAGGAACAAGGGATAGGGCTGTCATAATATCTGGTTCGCCTGATGAGACGCAGGCAGCACAGAGCCTTCTTCATGCATTCATCCTAACCGGACCATCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55901.p1 GENE.R_Transcript_55901~~R_Transcript_55901.p1 ORF type:complete len:667 (+),score=111.69,KH_1|PF00013.25|8.1e-10,KH_1|PF00013.25|3.1e-14,KH_1|PF00013.25|5.3e-10,KH_1|PF00013.25|2.7e-13,KH_1|PF00013.25|3.6e-12,KH_3|PF13014.2|9.5e-07,KH_3|PF13014.2|4.3e-08,KH_3|PF13014.2|8.3e-09,KH_3|PF13014.2|8.5e-09,KH_3|PF13014.2|2.6e-05,KH_2|PF07650.13|0.34,KH_2|PF07650.13|6.6e-06,KH_2|PF07650.13|1.6,KH_2|PF07650.13|5.7,KH_2|PF07650.13|56,KH_4|PF13083.2|1.9e+02,KH_4|PF13083.2|0.024,KH_4|PF13083.2|0.0084,KH_4|PF13083.2|1.7e+02,KH_4|PF13083.2|56 R_Transcript_55901:319-2319(+)
MANSFLFPPSKRPMSDPLTPLPSLSNGTSTTAKRLKQPPHPLQIPAGHVSLRMLCHASLIGAFIGKSGSSIKQLQLDTGSKIRVEDSLQPGSDHRVILIVAPSTRFKKLLFGNVEYDVSAAQDAAVRVFDKVLEVSAEINGTVSFRFLIDETQAGSVIGKGGKVIEKMRKESGAKIRVLLGDHLPPDVSSPDEVVEIEGDALAVKKALIGVSGRLQECPQGEKPSIKDSRPLQSTSQPTVPLSDFLVDPPLQQMSRPFQSTAQPPVPIPAPEFHVVPPLQRMPISTATTSSSPTLSGRPLLFENDRFTASDTKLQNQEVVFKILCLNDRVGGVIGRGGSIVRALQDETGANISIGATLSNCDERLITITSKEDVESRYSPAQRAAVLVFSRSVEAGVEKVLETNMSKGSSVSARLLVPANQVGCLLGKGGVIVSQMRKATGASISIIRDQVPKCASEDDEVVEISGQFVNVQDALYQVTNRLRNNLLPSKLMNDTGSWTNNSLRLDGRVGDTTLVGSHQSLGPSQSIDRQATIRQGLDPLLRPHRLDSSPLGIRTSEVAAGVNSKTSVNLGGGFSTNGAVELVSSKRPAIVTNTTVEILVPEDAVSSVYGENGSNLARIRQISGAKVAVHEARPGTRDRAVIISGSPDETQAAQSLLHAFILTGPS*

Click here to download the sequence:
Link to NCBI Protein BLAST