Transcript Information: R_Transcript_55941.p1


Annotated TAIR IDAT4G23820.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:12397217-12400050 | Reverse length=444
E-Value1.5E-240
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6195765379226
Replicate 24.2338218946445
Replicate 35.2789189521997
Condition 2: 8 Hour
Replicate 14.0809774912075
Replicate 24.3249442244268
Replicate 35.6023489569096
Condition 3: 24 Hour
Replicate 15.5741178042574
Replicate 25.0373122157491
Replicate 36.5753186919486


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_55941.p1 GENE.R_Transcript_55941~~R_Transcript_55941.p1 ORF type:complete len:486 (+),score=49.47,Glyco_hydro_28|PF00295.13|9.4e-40,Pectate_lyase_3|PF12708.3|9.2e-13 R_Transcript_55941:73-1458(+)
ATGGAGTACTGTATAAATTATACATACAATTTCCCCACAAAAATGTATTATTATCGGCTGCCAATTTTGGTGATATGCTCCTTGTCAATGTCAGCCTCGATTGGAAACGCCATCAATGATGTGGTTGTGACATGCTCGGATATTGTGCCGGCACGGTACCGGCACGATCAAATATCGATAGCGGACTTCGGTGGCGTTGGTGACGGAGTGACAGTGAACACCAAGGCCTTTGAAGCGGCAATTTATCGGATTGAGCATTTGGGAAGGAGAGGGGGTACTCTGCTTTATATACCACCAGGGGTGTACTTAACTGAAAGATTTAACTTGACTAGCCATATGACTCTTTACTTGGCCAGAGATGCCGTTATCAAAGCCACTCAGGATACATCTAATTGGCCATTAGCTAATGCACTGCCATCTTATGGAAGAGGGAGAGAGCTTCCTGGAGGAAGGTTTATGAGTTTCATGTTAGGAGATGGAGTCCATGATGTCATTATTACTGGTGAGAATGGAACAATTGATGGTCAAGGTGATGTTTGGTGGAACATGTGGAGAAAAAAGACTCTTCCATATACTAGACCTCATCTCATAGAATTCATGCATTCCAGACACATCATTATTTCTTATGTGATATTGAAGAACTCTCCATTTTGGAACATTCACCCTGTTTATTGCAGCAATTTTGTTGTACGATATACGACGATATTGGCACCATCTAACTCTCCCAATACGGATGGAGTTGACCCAGATCCGAGCACCAATATATGCATCGAAGACTCCTACATTTCTACTGGTGATGATCTCGTGGCAATTAAGAGTGGGTGGGATGAGTATGGAATTTCCTATGGCCGTCCTAGCTCTAACATCACTATTCGAAGAGTAACTGGATCATCTCCATATGCGGGGATTGCTGTTGGAAGTGAGACATCTGGTGGGGTGGAGCATGTTTTGGCCGAGCATATCAGCCTTTACAACTTGGGAGTTGGAATACATATAAAGACAAACGTAGGGAGGGGTGGGTATATAAGAAACATAACAGTCTCTGATGTATACATTGAAAAAGCTCGTAAAGGCATCAAGATTGCAGGAGATGTTGGAGATCATCCTGATGACAGATTCGACCCAAGTGCTATTCCAGTTGTCCAGGATATAACACTGAAGAACATTTGGGGCCTGAGGGTTCGACAGCCTGGACTGATCAAGGGTATAAAGAATGCTCCATTCACTCATATCTGTCTTTCAGATATCAACCTTGATGGCTCGGAAATGAAAACTACTCCTTGGGAGTGCTCTGACGTGATGGGTTCCTCCTCAAAGGTAAGCCCATCGCCTTGCTCCGAATTGGTTAGCACCCAAGGTACTGGCTTCTGTTCGAATCAAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_55941.p1 GENE.R_Transcript_55941~~R_Transcript_55941.p1 ORF type:complete len:486 (+),score=49.47,Glyco_hydro_28|PF00295.13|9.4e-40,Pectate_lyase_3|PF12708.3|9.2e-13 R_Transcript_55941:73-1458(+)
MEYCINYTYNFPTKMYYYRLPILVICSLSMSASIGNAINDVVVTCSDIVPARYRHDQISIADFGGVGDGVTVNTKAFEAAIYRIEHLGRRGGTLLYIPPGVYLTERFNLTSHMTLYLARDAVIKATQDTSNWPLANALPSYGRGRELPGGRFMSFMLGDGVHDVIITGENGTIDGQGDVWWNMWRKKTLPYTRPHLIEFMHSRHIIISYVILKNSPFWNIHPVYCSNFVVRYTTILAPSNSPNTDGVDPDPSTNICIEDSYISTGDDLVAIKSGWDEYGISYGRPSSNITIRRVTGSSPYAGIAVGSETSGGVEHVLAEHISLYNLGVGIHIKTNVGRGGYIRNITVSDVYIEKARKGIKIAGDVGDHPDDRFDPSAIPVVQDITLKNIWGLRVRQPGLIKGIKNAPFTHICLSDINLDGSEMKTTPWECSDVMGSSSKVSPSPCSELVSTQGTGFCSNQS*

Click here to download the sequence:
Link to NCBI Protein BLAST