Transcript Information: R_Transcript_56350.p1


Annotated TAIR IDAT3G23910.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:8636594-8639344 | Reverse length=421
E-Value4.6E-108
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.868022186121
Replicate 27.3930635268655
Replicate 310.861880268598
Condition 2: 8 Hour
Replicate 18.449347763486
Replicate 29.9731632625006
Replicate 311.717589015508
Condition 3: 24 Hour
Replicate 116.706385541287
Replicate 214.496414294276
Replicate 316.646986663274


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56350.p1 GENE.R_Transcript_56350~~R_Transcript_56350.p1 ORF type:complete len:426 (+),score=96.57 R_Transcript_56350:108-1385(+)
ATGGACTCACACTCACAACCTCTCAATCTCGATTCTATTCGCAGTCAAATTGAAGAACTAACCACCTTCCTCAAAGAAGATCCCAGCAAAAACTCCTCACTTTCTCCTTCTGAATCCCAGCAACTGCTTCAAGAATGCCTTCAAGCTTTTCAGACCAAAGTGAAACAAATTGAGTCAGACCATTCTGATATTGGCCATTTCAATGATGAAGATCTGGATGCATACACGGATCGATTGAGACTTGAGCTTAAATTGGTAGAGGCTGATAATGCTTCAGTCTCTAAGGAAATTGAGGATCTAACACAATCGTATGTGGAAGGTACTTGTGAATTGGAGCGTAATCTTGTATCCTTGCGCCATATTGTGGATTCTATTGAATCAAAGGGACTGGGGCAAGCAGAATCGAGAGATCATGTTCACAACTTTCATCAAGGAGAAGATCATACAAAATTGTTGAAGGCAGATAATGACCGCTTTGAGGTAATGGACTTGAAAAATAAAATTGAGAACAACAATATGACATTAAAGAAATTGCAAGATCTTGAACTCAACTTGAAAAGGGTCGAGCTTGTTGAAAAGATTGAGGAAGCATTGACTGGCTTGAAGGTGATTGATTTTGAAGATAACTGCATAAGGGTGTCACTGAGGACATACATCCCAAATGCTGAAGGCTGGGTGTGCCAGCTAAAGGCTGAAAACAATATAAACTTATCTGAAGTGAACCATGAGTTGCTTATTGAGGTCAAGGATGGTACAATGGAGCTAAAAAATGCAGAGATTTTTCCAAATGATGTTTACCTAGGAGACATTGTTGAAGCTGCAAACAATTTCAGCAAGTTATTTTCTACCCTTTTGGTGCCGGAGACAAGGTCCTCTTTGGGATGGTTTCTGCACAAAGTACAAGATAAAATTGTTACCTGCACTGTAAGACAGGTTATGGTGAAGAATGCTAATGAATCTACAAGGCACTCCATTGAGTACTTGGATAAGGACGAGTTGGTTGTAGCTCACATGGTTGGTGGGATTGATGCCTTTATAAAGCCATCCCAAGGTTGGCCATTATCCACTTCTACATTGAAGCTAGTATCTCTGAGGTGTTCTGATCAGAACGCAAAGGAAATTTCATTGAGTTTGCTTTGCAAAGTTGAGGAGGTGGCAAATTCTTTAGATGATGACGTACGCAGAAGCATAACAGACTTTTTGGATGGCATTGAAGCAATACTTTTGGAGAAAATGCATACAGAACTACATTCTGATAGTATTACACAACGAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56350.p1 GENE.R_Transcript_56350~~R_Transcript_56350.p1 ORF type:complete len:426 (+),score=96.57 R_Transcript_56350:108-1385(+)
MDSHSQPLNLDSIRSQIEELTTFLKEDPSKNSSLSPSESQQLLQECLQAFQTKVKQIESDHSDIGHFNDEDLDAYTDRLRLELKLVEADNASVSKEIEDLTQSYVEGTCELERNLVSLRHIVDSIESKGLGQAESRDHVHNFHQGEDHTKLLKADNDRFEVMDLKNKIENNNMTLKKLQDLELNLKRVELVEKIEEALTGLKVIDFEDNCIRVSLRTYIPNAEGWVCQLKAENNINLSEVNHELLIEVKDGTMELKNAEIFPNDVYLGDIVEAANNFSKLFSTLLVPETRSSLGWFLHKVQDKIVTCTVRQVMVKNANESTRHSIEYLDKDELVVAHMVGGIDAFIKPSQGWPLSTSTLKLVSLRCSDQNAKEISLSLLCKVEEVANSLDDDVRRSITDFLDGIEAILLEKMHTELHSDSITQRV*

Click here to download the sequence:
Link to NCBI Protein BLAST