Transcript Information: R_Transcript_56406.p1


Annotated TAIR IDAT1G22020.1
Annotated Gene Nameserine hydroxymethyltransferase 6
Annotated Gene Symbol(s)SHM6
Annotation TypeOrtholog
Chromosome Positionchr1:7754599-7757087 | Forward length=599
E-Value3.6E-298
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.422694894056
Replicate 217.015959105151
Replicate 322.291548750758
Condition 2: 8 Hour
Replicate 117.523059748976
Replicate 220.170716479174
Replicate 326.496189910328
Condition 3: 24 Hour
Replicate 127.346266429208
Replicate 222.821792374926
Replicate 326.417387647377


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56406.p1 GENE.R_Transcript_56406~~R_Transcript_56406.p1 ORF type:complete len:633 (+),score=91.59,SHMT|PF00464.15|9.4e-165 R_Transcript_56406:226-2124(+)
ATGGATTTTACACACACACAATCGAATCTCTCTCTAGGTTTTCTCTCTCACTCATCACACTCTTCTCCTCATTCAATGGGGAATTCAAACCCTAATACTATTACTACTACCAGTGCTACTACTCGAACCCTAGTTCACGATGATTCAATCTCATTCCAGATCGATTCTAGGCTACGCGAATCTTCAACTCCGATGAATTCAATACCTCTCCAATTACTCGAACAATCCGCTCAAAATCGCCGGATTCAAGCCGTTGTCGCTGAAGACAGAGAAGTTGTGGACCACCAACAACCAGAAGACACTGAGGAGAGAGAAACCGGTGCCGATAACGATAAAAACAATAACGACGAAGATGAAGAGGTCGAGGAGTTTCGAATCTTAGGTCACTCTATGTGTCTAAAACGACGTGGTGGTGATAGAGAAGATTCAACTGCATCATCATCTTCTGTCGTGAAGCGCGTTTTCGTGGATTCTGGCCTTGAATCGCGTCGATGCGCGGTAAAGTCGTGGGGGAACCAGCCGTTGCGGGCGGCTGACCCGGAAATCTTCGAAATTATGGAAAAGGAGAAGCACAGACAATATAAAGGGATTGAATTGATTGCATCGGAGAATTTCGTGTGCAAGGCTGTAATGGAAGCTCTAGGAAGTCACTTGACGAATAAATACTCAGAGGGAATGCCTGGTTCGAGGTATTATGGGGGTAATCAGTACATGGATGAGATTGAGACGTTGTGTTGTGAGCGAGCTTTAGTCGCATTTGATCTTTGCTCGGACAATTGGGGTGTAAATGTACAACCCTACTCTTGTACCTCAGCAAATTTAGCGGTTTATACTGGACTTTTATTGCCAGGGGATCGGATTATGGGGTTAGATACCTTTTCTGGAGGGAATGCTAGTCATGGTTGTTATACTCCGAATGGTAGGAAGGTTTCTGGGGCATCGATTTTCTTTGAGAGCTTTCCTTATAAGATTAATCCTCAAACTGGTTATGTGGATTATGATAAGCTTGAGGAGAAGGCTCTTGATTTTCGTCCTAAAATATTGATTTGTGGTGGGAGTTCGTATCCTCGTGATTGGGATTATGCTAGGTTGAGGCAGATTGCTGATAAGTGCGGAGCGGTTTTGATGTGCGATATGGCTCAAATTAGTGGCCTTATTGCTGCAAAGGAATGTGCCAGCCCGTTTGATTATTGCGATATTGTTACCTCTACTACTCACAAGAGTCTGCGAGGACCTAGAGGAGGTATAATCTTTTATAGGAAGGGCAAGAAACCAAGAAAGAGAGGATTGCTCTTGAATCCTTCCGATGACGATGAGCAGTATGTTTTTGAGGAAAAGATCAACTTTGCTGTATTCCCTGCTTTACAAGGTGGTCCGCACAATAACCACATTGCTGCTCTTGCTATAGCCTTGAAACAAGTTGCTACCCCTGAGTATAAGGCATACATGCAACAAGTTAAGAGAAATGCACAGGCCCTGGCATCTGCCTTACTGAGAAGAAAGTGCAAGCTAGTAACTGGAGGAACTGACAATCACTTGCTACTTTGGGATCTACGGCCTCTTGGGTTGACAGGCAAGAATTTTGAGAAGGTCTGTGAAATATGCCATATCACTTTAAATAAAGTTGCTTTATTTGGCGACAACGGCACCATTACTCCGGGCGGTGTTAGGATTGGTACACCTGCAATGACAACAAGAGGCTGTCTGGAGGCTGATTTTGAGATAATTGCTGACTTTCTCATTCGTGCTGCTCAGATTACGAGTATGGTGCAGCGAGAACATGGAAAGCTACAGAAATGCTTCCTGAAGGGTTTACAGAACAACAAGGATGTTGTGGATTTGCGTGCTCGTATTGAAGCTTTTGCTGCTCAATTTGCCATGCCAGGATTTGACATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56406.p1 GENE.R_Transcript_56406~~R_Transcript_56406.p1 ORF type:complete len:633 (+),score=91.59,SHMT|PF00464.15|9.4e-165 R_Transcript_56406:226-2124(+)
MDFTHTQSNLSLGFLSHSSHSSPHSMGNSNPNTITTTSATTRTLVHDDSISFQIDSRLRESSTPMNSIPLQLLEQSAQNRRIQAVVAEDREVVDHQQPEDTEERETGADNDKNNNDEDEEVEEFRILGHSMCLKRRGGDREDSTASSSSVVKRVFVDSGLESRRCAVKSWGNQPLRAADPEIFEIMEKEKHRQYKGIELIASENFVCKAVMEALGSHLTNKYSEGMPGSRYYGGNQYMDEIETLCCERALVAFDLCSDNWGVNVQPYSCTSANLAVYTGLLLPGDRIMGLDTFSGGNASHGCYTPNGRKVSGASIFFESFPYKINPQTGYVDYDKLEEKALDFRPKILICGGSSYPRDWDYARLRQIADKCGAVLMCDMAQISGLIAAKECASPFDYCDIVTSTTHKSLRGPRGGIIFYRKGKKPRKRGLLLNPSDDDEQYVFEEKINFAVFPALQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALASALLRRKCKLVTGGTDNHLLLWDLRPLGLTGKNFEKVCEICHITLNKVALFGDNGTITPGGVRIGTPAMTTRGCLEADFEIIADFLIRAAQITSMVQREHGKLQKCFLKGLQNNKDVVDLRARIEAFAAQFAMPGFDI*

Click here to download the sequence:
Link to NCBI Protein BLAST