Transcript Information: R_Transcript_5642.p1


Annotated TAIR IDAT3G07610.3
Annotated Gene NameTranscription factor jumonji (jmjC) domain-containing protein
Annotated Gene Symbol(s)IBM1
Annotation TypeOrtholog
Chromosome Positionchr3:2426148-2432876 | Forward length=1049
E-Value5.6E-160
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7192694664166
Replicate 27.3302374931054
Replicate 38.7876320818799
Condition 2: 8 Hour
Replicate 17.4551009649935
Replicate 27.4284120324913
Replicate 310.107425940852
Condition 3: 24 Hour
Replicate 110.640120399849
Replicate 29.8935295293997
Replicate 311.684302434345


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5642.p1 GENE.R_Transcript_5642~~R_Transcript_5642.p1 ORF type:5prime_partial len:1478 (+),score=502.52,JmjC|PF02373.18|1.3e-14,zf-4CXXC_R1|PF10497.5|7.3e-07,zf-4CXXC_R1|PF10497.5|2.1e+03,zf-4CXXC_R1|PF10497.5|1.1e+04 R_Transcript_5642:3-4436(+)
GCGAATGAGGATGGAGTGAGTGTTGATGGTGAGAAACAAGTTGAAGAAAAGGAGGGTCATTCAAAAGCGAATGAGGATGAAGTGAGTATTGATCGCGTTGAGGGTGAGAAACAAGTTGAACAAAAGGAGGGTCATTCAAAAGCGAATGAGGATGGAGTGAGTTTTAATGGTTTTGAGGGTGAGAAACAAGTAGAAGAGAAGGAGGGCTATTCAAAAGCGAATGAGGATGGAGTGAGTGTTGATGGTGAGAAACAAGTTGAAGAAAAGGAGGGTCATTCAAAAGCGAATGAGGATGGAGTGAGTTTTAATGGTTTTGAGGGTGAGAAACAAGTAGAAGAGAAGGAGGGCTATTCAAAAGCGAATGAGGATGGAGTGAGTTTTAATGGTTTTGAGGGTGAGAAACAAGTAGAAGAGAAGGAGGGCTATTCAAAAGCGAATGAGGATGGAGTGAGTGTTGATGGTGAGAAACAAGTTGAAGAAAAGGAGGGTCATTCAAAAGCGAATGAGGATGAAGTGAGTATTGATCGCGTTGAGGGTGAGAAACAAGTTGAACAAAAGGAGGGGCATTCAAAAGCGAATGAGGATGAAATGAGTGTTGATGGTGCTGAGGGTGACAAAAAAGTTGAAGAAAACAAAGAGGATCATTCAAAAGTGAATGAGGAAGAAATGAGAGTGAGTATTGATCGCGTTGAGGGTGAGAAACAAGTTGAACAAAAGGAGGGTCATTCAAAAGCGAATGAGGATGAAATGAGTGTTGATGGTGCTGAGGGTGACAAAAAAGTTGAAGAAAACAAAGAGGATCATTCAAAAGTGAATGAGGAAGAAATGAGAGTTGAGGGTGAGAAACAAGTTGAAGAAGAAAAGGAAGAGGGACTTGCTAGGGTAAAAGAGGAAGAAATGGGTGTTGAAGGTGAGAAAGAAGTTGAAGAAGATAAGGAGGTCCATTCTAAGGAGAAAGAGGAAGAAAAGGATAATGAAGGTGTTGAGGGTGAAAAAGAAGTTGAAAAAGAAAAGGAGGGTCATTCAAAGGTGAACGAGGAAGAAATGGGTGTTGCAGGTGAGAAACAAGTTGTAGAAGAAAAAGAGAGTTGTTTAAGAGTCAAAGTGGAAGAAATGGGTAATGAAGGTGTTGAGGATGAGAAACAAGTTGGAGAAGAGGAAGAAAGAGAGGAAAGTGTGTGGAAGGCGAAAGAAGAAGTGGGTCTTGAGGGTGATAAACAAGTTGAAGAAGAGAAGGGAAGAGAGGAAATTGTTTTGAAGGCGAAAGAAGTGAGTGTCGAGGGTGAGAAACAAGTTGAGACAGAGAAGAGGAAGCGGAGGAGTTGTTCACAGAAGGCAAAAGAAGTGGGTATTGATGATGATATAGAAGATGAAGATAAAGATGACGAGAGGAAGTCAACTAAGAAGCGAAGGGGGCGAGGGTGTAAAAGGGGTGGGAGAACAGTGGCAAAGGAGGCTAAGGAAGAAGGTTCTGATGAGGATAAAAAGGATGTTGGTAGTAAGTCAAGAGGTGGTGGAAATGGGAGGAAGAAGAAAGAAGTAAAGGAGGTACCAACTGTTGGAGAAAATGGCTCAGAGAAAAAAGATGAAGGTTTTGCTCCCGACAGGCCTAGGAGGTCGGTGCGAAGTGCTACCACTAGAGCTTCTAATGAGGAGAAAGATTATGACGAGAAAAAAATCAGGTCAAAGAAAATTTTTGATGAGAATGGGATCAAGATTGATTCTGATATGTGCCATCAGTGTCAAAGGAATGACAAGGGAGAAGTGGTGAGGTGCACCAATTGTAAGACCAAGCGGTTTTGTATGCCCTGCATCCATAATTGGTATCCCCAACTGACAGTGGTGGAGATTGCTCGGGCCTGCCCATTCTGCCTTGGGAACTGCAACTGCAAGGCATGCTTGCGAGCCGAAGGAGCCGCCAAAAACAAGGTAAAGCTTAATATTAGCAAAGAACAAAAAGTTGAGCATTCCAAACACCTGCTGAAGAGTATTTTGCCCTTTGTGAACGAAATTAATGAGGAACAGATGAAGGAAAAGGAGATAGAGGCTAAAATCCAGGGTGTATCACTATCTGAAATAGAACTCCCAAAAGCAATATGTGGGAAAAATGAGCGTATGTACTGTGACAACTGCAGAAGTTCAATTTTTGATTTTCACCGAAGTTGCCCAAACTGCGAATATGATTTATGTCTTGCTTGCTGCCGAGAATTTCGTGCTGGACAGCTTCCAGGTGGTAGGGAGGAAGTGATAATGGAATATATTGACAATGGATATGATTATTTGCATGGTGGTGAACCACAGGAAAAACCTAGAGCCAGCTCTCGTCTAGCCAAGGATATACCTGCTGGTACTGAAGCTGAAGAAGTACCTGCTGGTAGTCAAGCCAAGGGAAACCCTCCTGGTGGTCAAGCCAAGGAAAAACCTGAATGGAGAACAAACGATGATGGTAGTATACCCTGCCCACCAAAAGCATGTGGTGGTTGTGGTGGAAGTATTCTCCAACTTAAATCTGTTTTATCAGATGGTTGTATTTCAAAATTGTTGTGCCGCGGGGAGCTAATAGCGGCGACATGGAAACATGAGAGCATATCCCAGGCTCCTGATGGGTGCTCATGTTCCGATTCCATGAATGATTCTGGCAGTGAAAGTAATGTACGGAAGTGTGCTTCCAGGGAAGGCTCCAATGACAATTATTTGTATTCTCCTGATGCTAGAGAGCTTCAACAGCGAGACCTGAACCACTTCCAGTGGCATTGGGCTCGGGGTGAACCATTAATTGTCAGGCATGCTCTTGAAACTGCCACTGGTCTAAGCTGGGAGCCACTTGTCATGTGGCGTGCTGTCCGTCAAATTAGAAACACCAATCATTCCACACTATTGGATGTGAAAGCCATTGATTGCCTGGATTGGTGTGAGGTTGATATAAATGTTCACAAATTCTTTATTGGATATTCAAAGTGTGGGTTTGACCGTCTTGGCTGGCCTATCATACTGAAATTGAAAGATTGGCCACCTGGTACTGAATTTGAAAAGCAATTGCCACGCCATGGTGCCGAATTTATTTGTGCTTTGCCGTTTAAGGAGTACACTCATCCCAGAGAAGGCGTTCTGAACCTTGCTGCAAAGTGGGATAAAAAAACGCTGAAGCCAGACTTGGGCCCAAAAACTTATATTGCATATGGACTTCCTCAAGAGTTGGGGCGTGGCGATTCTGTTACCAAACTTCATTGTGATATGTCTGATGCGGTCAATATTTTGGCACATACTGCTGAACTCACTTTGGACGATGCAAAACTTAGCGAGGTTTACAAATTGAAGCGGAAACATTTTGATCAGGATCAAAAGGAATTCTTTGGCATCGAGTTGCCCAAGGAGAATAAAGTTGGTGGTCAAAAACAGAAGACAGATCAAACCAAGTCTAGAAAGGGTTCTCGAAAAAATAGACCTGAAAATTTGGATGAGGCTCCTGATTGTTGCAAGAGAGAAATGTTGGATGAAGAAATGGAAAAATGCTTATCTGAAAAGGGTGATGAATCAATGGCTGATGTCCAAGTAGGAAAAGTAGATCTCGGAAAATGTAGTGGGAATGAAAGCTCACCTCGTGCAGTTGGGAGCTCTGATAGTTCAGAGCAAGAGCTTGTGCACAAAGGAACAGTAGAAGGCATGTCTGAAAAGATTGTTGATACCATTTCCGATCCTGATCTGCCAAACAGGAGTGATGTCTCAGCTCCTGCATGTGGGAGTTCTGGTTGGTCAGAGCATGAGATGGTAGACAATGAAAAGACGGAAGGTGTGGGTGGAGAAGTTAATGAAACAAATGAATATTTGCAATCAGGAAAAGTCGAGGTTGACTGCAATGTCAATGGGGCCCCTGCTCATTCATTTGGAAGTTTTGATGGTTTGGAGCACAAAGATGGAGGTGCTCTTTGGGACATCTTCCGAAGAGAAGATACCCCTAAGCTGCAGGAATATCTTAAAAAACACTATCGTGAATTCCGTCATATCCATTGTGCTCCTTTGAAACAGGTTATTGACCCTATCCATGATCAGACATTCTACTTGACTGAGGATCATAAAAGGAGGCTCAAGGAAGAATTCGGAATTGAGCCATGGACTTTCGTCCAGAAGCTTGGAGAAGCAATCTTTATTCCTGCTGGCTGTCCTCATCAAGTCAGAAATTTGAAGTCATGCATCAAAGTCGCACTTGATTTCGTATCACCAGAGAGCATTCACGAGTGTGTCCGGCTATCTGGGGAGTTCCGTGTTCTGCCCCAAAATCACAGGGCTAAGGAGGATAAGCTTGAGGTGAAGAAAATGACCATCCATGCTCTGAGACAACTTGTCAAGGACTTGGAGGAGTTTTTTCCCAACTCTGATGCTGGTGAAAATGTAGTTAGAACTGAGAAGGCACAGCCCAGTTCTGTTTCTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5642.p1 GENE.R_Transcript_5642~~R_Transcript_5642.p1 ORF type:5prime_partial len:1478 (+),score=502.52,JmjC|PF02373.18|1.3e-14,zf-4CXXC_R1|PF10497.5|7.3e-07,zf-4CXXC_R1|PF10497.5|2.1e+03,zf-4CXXC_R1|PF10497.5|1.1e+04 R_Transcript_5642:3-4436(+)
ANEDGVSVDGEKQVEEKEGHSKANEDEVSIDRVEGEKQVEQKEGHSKANEDGVSFNGFEGEKQVEEKEGYSKANEDGVSVDGEKQVEEKEGHSKANEDGVSFNGFEGEKQVEEKEGYSKANEDGVSFNGFEGEKQVEEKEGYSKANEDGVSVDGEKQVEEKEGHSKANEDEVSIDRVEGEKQVEQKEGHSKANEDEMSVDGAEGDKKVEENKEDHSKVNEEEMRVSIDRVEGEKQVEQKEGHSKANEDEMSVDGAEGDKKVEENKEDHSKVNEEEMRVEGEKQVEEEKEEGLARVKEEEMGVEGEKEVEEDKEVHSKEKEEEKDNEGVEGEKEVEKEKEGHSKVNEEEMGVAGEKQVVEEKESCLRVKVEEMGNEGVEDEKQVGEEEEREESVWKAKEEVGLEGDKQVEEEKGREEIVLKAKEVSVEGEKQVETEKRKRRSCSQKAKEVGIDDDIEDEDKDDERKSTKKRRGRGCKRGGRTVAKEAKEEGSDEDKKDVGSKSRGGGNGRKKKEVKEVPTVGENGSEKKDEGFAPDRPRRSVRSATTRASNEEKDYDEKKIRSKKIFDENGIKIDSDMCHQCQRNDKGEVVRCTNCKTKRFCMPCIHNWYPQLTVVEIARACPFCLGNCNCKACLRAEGAAKNKVKLNISKEQKVEHSKHLLKSILPFVNEINEEQMKEKEIEAKIQGVSLSEIELPKAICGKNERMYCDNCRSSIFDFHRSCPNCEYDLCLACCREFRAGQLPGGREEVIMEYIDNGYDYLHGGEPQEKPRASSRLAKDIPAGTEAEEVPAGSQAKGNPPGGQAKEKPEWRTNDDGSIPCPPKACGGCGGSILQLKSVLSDGCISKLLCRGELIAATWKHESISQAPDGCSCSDSMNDSGSESNVRKCASREGSNDNYLYSPDARELQQRDLNHFQWHWARGEPLIVRHALETATGLSWEPLVMWRAVRQIRNTNHSTLLDVKAIDCLDWCEVDINVHKFFIGYSKCGFDRLGWPIILKLKDWPPGTEFEKQLPRHGAEFICALPFKEYTHPREGVLNLAAKWDKKTLKPDLGPKTYIAYGLPQELGRGDSVTKLHCDMSDAVNILAHTAELTLDDAKLSEVYKLKRKHFDQDQKEFFGIELPKENKVGGQKQKTDQTKSRKGSRKNRPENLDEAPDCCKREMLDEEMEKCLSEKGDESMADVQVGKVDLGKCSGNESSPRAVGSSDSSEQELVHKGTVEGMSEKIVDTISDPDLPNRSDVSAPACGSSGWSEHEMVDNEKTEGVGGEVNETNEYLQSGKVEVDCNVNGAPAHSFGSFDGLEHKDGGALWDIFRREDTPKLQEYLKKHYREFRHIHCAPLKQVIDPIHDQTFYLTEDHKRRLKEEFGIEPWTFVQKLGEAIFIPAGCPHQVRNLKSCIKVALDFVSPESIHECVRLSGEFRVLPQNHRAKEDKLEVKKMTIHALRQLVKDLEEFFPNSDAGENVVRTEKAQPSSVSE*

Click here to download the sequence:
Link to NCBI Protein BLAST