Transcript Information: R_Transcript_56448.p1


Annotated TAIR IDAT2G16950.1
Annotated Gene Nametransportin 1
Annotated Gene Symbol(s)TRN1, ATTRN1
Annotation TypeOrtholog
Chromosome Positionchr2:7353939-7360637 | Forward length=895
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.669752748383
Replicate 221.700087022431
Replicate 328.435067563492
Condition 2: 8 Hour
Replicate 124.513223455566
Replicate 228.906748927656
Replicate 339.669888685449
Condition 3: 24 Hour
Replicate 136.963352195667
Replicate 232.84878223591
Replicate 334.898049819221


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56448.p1 GENE.R_Transcript_56448~~R_Transcript_56448.p1 ORF type:complete len:895 (+),score=203.54,HEAT_EZ|PF13513.2|11,HEAT_EZ|PF13513.2|59,HEAT_EZ|PF13513.2|70,HEAT_EZ|PF13513.2|56,HEAT_EZ|PF13513.2|1e+03,HEAT_EZ|PF13513.2|4.5e+03,HEAT_EZ|PF13513.2|3.9e-11,HEAT_EZ|PF13513.2|0.74,HEAT_EZ|PF13513.2|4.9e+02,HEAT_EZ|PF13513.2|16,HEAT_EZ|PF13513.2|0.0049,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|4.6e+02,HEAT|PF02985.18|10,HEAT|PF02985.18|5.6e+03,HEAT|PF02985.18|0.0078,HEAT|PF02985.18|1.2e+04,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.00037,HEAT|PF02985.18|0.11,HEAT|PF02985.18|12,HEAT|PF02985.18|0.00092,HEAT|PF02985.18|4.3e+02,HEAT|PF02985.18|6.1e+03,HEAT_2|PF13646.2|0.054,HEAT_2|PF13646.2|0.0072,HEAT_2|PF13646.2|0.48,HEAT_2|PF13646.2|0.19,HEAT_2|PF13646.2|0.0023,HEAT_2|PF13646.2|0.028,HEAT_2|PF13646.2|0.96,HEAT_2|PF13646.2|1.1e+02,IBN_N|PF03810.15|4.1e-15,Cnd1|PF12717.3|7.3e+03,Cnd1|PF12717.3|0.0041,Cnd1|PF12717.3|34,Cnd1|PF12717.3|2.8e+02,Vac14_Fab1_bd|PF12755.3|1.9,Vac14_Fab1_bd|PF12755.3|2.3,Vac14_Fab1_bd|PF12755.3|3.6,Vac14_Fab1_bd|PF12755.3|86,Vac14_Fab1_bd|PF12755.3|82,Vac14_Fab1_bd|PF12755.3|3.2e+03,CLASP_N|PF12348.4|3.1e+03,CLASP_N|PF12348.4|80,CLASP_N|PF12348.4|0.1,CLASP_N|PF12348.4|59,CLASP_N|PF12348.4|17,Adaptin_N|PF01602.16|0.049,Adaptin_N|PF01602.16|1.2,Adaptin_N|PF01602.16|83,Adaptin_N|PF01602.16|3.4e+02 R_Transcript_56448:298-2982(+)
ATGACGGCATTTTCCGGGGCCGGGTCGTTGTGGCAACCGCAAGAGCAGGGAATAAAGGAGATATGTGGATTATTGGAGCAGCAAATATCACCTGTCTCCACTTCTGAGAAATCCCAGATTTGGCAGCAGCTTCAACACTATTCCCAGTTCCCGGATTTCAATAATTACCTCAGTTTCATCTTGTCTCATGCTGAAGTGAAGCCTGTGGAGGTTCGGCAGGCTGCTGGCTTACTTCTGAAGAATAATCTCAGAACTGCTTTCAAATCTATGACCCCGGCAAATCAGCAATATATAAAGTCGGAGTTGTTGCCTTGTTTAGGGTCACCTGATCGGAACATCCGTACCACTGCTGGGACCATTGTAAGCGTTATTGTGCAGTTGGTCGGGGTTGCTGGTTGGCCGGAGCTGTTGCAGGCTCTTTTAGCATATTTAGATAGTAGTGATCCCAGTCATGTTGAAGGTGCAATGGATGCTCTATCTAAGATTTGTGAAGATGTACCTCAAGTGCTTGATTCAGATGTTCCAGGAATGGCTGAACGCCCCATCAATGTTTTTCTCCCAAAATTGTTTGAGTTTTTCCGGTCAACACATGTCTTGCTGAGGAAGCTTGCATTGAATTCTGTCAACCAGTACATTATGTTAATGCCATCATATTTGTATATGTCCATGGACCAATATCTTCAAGGCTTGTTTCTTCTCGCTAATGACCCTGCTCCAGAGGTGCGAAAACTGGTCTGCTCGGCTTTTGTTCAGCTTGTGGAAGTGAAACCTTCTTTTCTTGAGCCCCATTTGAGAAATGTTATAGAGTACATGCTGCAAGTGAACAAGGATAGTGACGAGGAAGTAGCACTTGAAGCTTGTGAATTTTGGTCCGCGTATTGTGATGCCCAATTACCACCTGAGAACCTGATCGAGTTCTTGCCACGGCTTATTCCTGTACTGCTGTCGAATATGGTCTATGCTGCTGCTGATGAGTCCTTAGCTGAAGCTGAGGAGGATGAGTCTGTGCCAGACCGCGATCAAGATTTGAAGCCACGGTTCCATGCATCGCGACTTCATGGCTCAGACGATCTGGAAGAGGATGATGATGTTGTCAATGTGTGGAATCTGCGGAAATGTAGTGCGGCTGCTTTAGATTACTTCTCCAATGTTTTTGGGGATGAGATTCTCCCTACACTACTGCCTTTAATTCAGGCTAATTTATCAAAGAGTGGTGATGAATCCTGGAAAGAAAGAGAAGCTGCAGTTTTAGCCATGGGTGCTGTGGCTGAGGGTTGCATTAATGGTTTATACCCTCATCTTTCAGAGATTGTATCCTTTCTCATTCCTCTCTTGGATGATAATTTTCCTCTTATACGGAGCATTTCTTGTTGGACACTTTCTCGTTTCAGCAAATATGTTGTTCAGGGTATTGGGCATCCAAAGGGTAACGAACAGTTTGAGAAGGTATTAATGGGTCTTCTTGGAAGAATATTGGACACCAACAAACGTGTACAGGAAGCTGCCTGCTCAGCTTTTGCAACACTGGAAGAGGAAGCTGCTGAAGAGTTGGCACCACGGCTAGAGACTATATTGCAGCACTTAATGTGCGCATATGGGAAATATCAGAAAAAGAATTTGAGGATTGTATATGATGCCATTGGAACTCTAGCTGATGCTGTTGGAGAAGAGCTAAATCAGCCTAGGTACCTGGAAATCCTAATGCCTCCGCTTATTGCAAAGTGGCAGCAGCTTTCAAATTTTGACAGAGATATTTTCCCATTGCTTGAGTGCTTTACATCCATAGCACAGGCGTTGGGACCAGGATTTTCCCAGTTTGCTGAACCTGTATTCCAGCGATGCATAAACATTGTTCAGACTCAACAAATGGCAAAGGTCAACCCTGCTTCTGCAGGCATTCAGTATGATAGAGAGTTTGTTGTTTGCTCTCTTGATTTGCTTTCTGGTCTTGTGGAGGGTCTTGGCAGCGGTATAGAGGGTTTGGTGTCACAAAGTATTTTGAGGGATTTGCTTTTGCAATGCTGTATGGATGATGCTGCTGACGTTCGCCAGAGTGCTTTTGCATTACTTGGAGACCTAGCAAGAGTTTGTCCTGTTTATCTTCACCCTTGCTTGCCACAGTTCCTTGACATCGCAGCTAAGCAACTGGACACTTCTAAGCTGAGGGATACAATTTCTGTGGCAAACAATGCTTGTTGGGCTATTGGGGAATTGGCAGTCAAGGTCCGGCAAGAGATTTCTCCTGTAGTTATGACAGTTGTCTCCTCTCTAGTTCCGGTACTTCAACATGCAGAGGAGCTGAATAAGTCGCTTATGGAAAATGCTGCCATTACTCTTGGGAGGTTTGCCTGGGTGTGTCCTGAGCTTGTATCACCTCATATGGAGCATTTTATGCAAGCCTGGTGCAGTGCTTTATCTATGATACGTGATGATATTGAGAAAGAAGATGCCTTTCGAGGCTTATGTGCAATGGTTAAAATGAATCCTACTGCAGCTTTGAATTCACTTCCCGTGATGTTGAAAGCAATTGCTAGTTGGCATGAAATTAGAAGCCAGGATCTGCAAAATGATGTACAACATGTGTTACGTGGTTATAAACAGATGCTGGCTAATGGACAGTGGGAGCAGTGTGTTGCTTCTTTGGACGCACCTATAAAGGACAAGTTGTCAAAGTATCAAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56448.p1 GENE.R_Transcript_56448~~R_Transcript_56448.p1 ORF type:complete len:895 (+),score=203.54,HEAT_EZ|PF13513.2|11,HEAT_EZ|PF13513.2|59,HEAT_EZ|PF13513.2|70,HEAT_EZ|PF13513.2|56,HEAT_EZ|PF13513.2|1e+03,HEAT_EZ|PF13513.2|4.5e+03,HEAT_EZ|PF13513.2|3.9e-11,HEAT_EZ|PF13513.2|0.74,HEAT_EZ|PF13513.2|4.9e+02,HEAT_EZ|PF13513.2|16,HEAT_EZ|PF13513.2|0.0049,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|4.6e+02,HEAT|PF02985.18|10,HEAT|PF02985.18|5.6e+03,HEAT|PF02985.18|0.0078,HEAT|PF02985.18|1.2e+04,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.00037,HEAT|PF02985.18|0.11,HEAT|PF02985.18|12,HEAT|PF02985.18|0.00092,HEAT|PF02985.18|4.3e+02,HEAT|PF02985.18|6.1e+03,HEAT_2|PF13646.2|0.054,HEAT_2|PF13646.2|0.0072,HEAT_2|PF13646.2|0.48,HEAT_2|PF13646.2|0.19,HEAT_2|PF13646.2|0.0023,HEAT_2|PF13646.2|0.028,HEAT_2|PF13646.2|0.96,HEAT_2|PF13646.2|1.1e+02,IBN_N|PF03810.15|4.1e-15,Cnd1|PF12717.3|7.3e+03,Cnd1|PF12717.3|0.0041,Cnd1|PF12717.3|34,Cnd1|PF12717.3|2.8e+02,Vac14_Fab1_bd|PF12755.3|1.9,Vac14_Fab1_bd|PF12755.3|2.3,Vac14_Fab1_bd|PF12755.3|3.6,Vac14_Fab1_bd|PF12755.3|86,Vac14_Fab1_bd|PF12755.3|82,Vac14_Fab1_bd|PF12755.3|3.2e+03,CLASP_N|PF12348.4|3.1e+03,CLASP_N|PF12348.4|80,CLASP_N|PF12348.4|0.1,CLASP_N|PF12348.4|59,CLASP_N|PF12348.4|17,Adaptin_N|PF01602.16|0.049,Adaptin_N|PF01602.16|1.2,Adaptin_N|PF01602.16|83,Adaptin_N|PF01602.16|3.4e+02 R_Transcript_56448:298-2982(+)
MTAFSGAGSLWQPQEQGIKEICGLLEQQISPVSTSEKSQIWQQLQHYSQFPDFNNYLSFILSHAEVKPVEVRQAAGLLLKNNLRTAFKSMTPANQQYIKSELLPCLGSPDRNIRTTAGTIVSVIVQLVGVAGWPELLQALLAYLDSSDPSHVEGAMDALSKICEDVPQVLDSDVPGMAERPINVFLPKLFEFFRSTHVLLRKLALNSVNQYIMLMPSYLYMSMDQYLQGLFLLANDPAPEVRKLVCSAFVQLVEVKPSFLEPHLRNVIEYMLQVNKDSDEEVALEACEFWSAYCDAQLPPENLIEFLPRLIPVLLSNMVYAAADESLAEAEEDESVPDRDQDLKPRFHASRLHGSDDLEEDDDVVNVWNLRKCSAAALDYFSNVFGDEILPTLLPLIQANLSKSGDESWKEREAAVLAMGAVAEGCINGLYPHLSEIVSFLIPLLDDNFPLIRSISCWTLSRFSKYVVQGIGHPKGNEQFEKVLMGLLGRILDTNKRVQEAACSAFATLEEEAAEELAPRLETILQHLMCAYGKYQKKNLRIVYDAIGTLADAVGEELNQPRYLEILMPPLIAKWQQLSNFDRDIFPLLECFTSIAQALGPGFSQFAEPVFQRCINIVQTQQMAKVNPASAGIQYDREFVVCSLDLLSGLVEGLGSGIEGLVSQSILRDLLLQCCMDDAADVRQSAFALLGDLARVCPVYLHPCLPQFLDIAAKQLDTSKLRDTISVANNACWAIGELAVKVRQEISPVVMTVVSSLVPVLQHAEELNKSLMENAAITLGRFAWVCPELVSPHMEHFMQAWCSALSMIRDDIEKEDAFRGLCAMVKMNPTAALNSLPVMLKAIASWHEIRSQDLQNDVQHVLRGYKQMLANGQWEQCVASLDAPIKDKLSKYQV*

Click here to download the sequence:
Link to NCBI Protein BLAST