Transcript Information: R_Transcript_56507.p1


Annotated TAIR IDAT1G80270.1
Annotated Gene NamePENTATRICOPEPTIDE REPEAT 596
Annotated Gene Symbol(s)PPR596
Annotation TypeOrtholog
Chromosome Positionchr1:30181265-30183331 | Forward length=596
E-Value1.2E-202
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.990113892014
Replicate 234.652161946898
Replicate 338.851269907175
Condition 2: 8 Hour
Replicate 131.503860884881
Replicate 232.361654192204
Replicate 343.99264369256
Condition 3: 24 Hour
Replicate 161.317230012892
Replicate 256.336425071679
Replicate 363.353702700027


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56507.p1 GENE.R_Transcript_56507~~R_Transcript_56507.p1 ORF type:complete len:635 (+),score=138.78,PPR|PF01535.16|0.15,PPR|PF01535.16|56,PPR|PF01535.16|3.6,PPR|PF01535.16|9.2e+02,PPR|PF01535.16|2.8,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.2,PPR|PF01535.16|0.00024,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|18,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|1.2e+04,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|74,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.17,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|34,PPR_2|PF13041.2|0.028,PPR_2|PF13041.2|1.1e+03,PPR_1|PF12854.3|9.8,PPR_1|PF12854.3|20,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|3.1e+02,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.76 R_Transcript_56507:207-2111(+)
ATGTGGGCTCTTAGTCGAGCTTCCACTAATTCCGTCAGAGTCCAAGGGTTGAAAATGGCCACTTTCCGAGCCTGTGCTGGAGTTGGAACGCTTGGAAGCGGTATAGAGGAGAAATCAAGTAGCTTCAATGGTCAAACAACTAATAGATGGATAACATCTAAAACATGTTATTGTGCATCTAAACCATGCTGTTGTGCGGTAAAAGTAGCAAATCCGTTCTTTATTGGGACTCGAGGTCTTTCTTCACAGGCTGGTGCTAAGAGTGGTGGAGAAGAAGAGGATTCCTTAGAAGAGGGGTTTTCTGAGCTTGAAATGCCAGAAGCCTCCGAGACAACCAATGTTGATATTGTAGATGAGGATACTACTTCAGATTCTGAGTCTGATGTATCTAGTGACGAGGAGAATCATGAAGAGGGCCTAGAATCTGAGCTGATGGCAGATACTGAGGCTGATTCCGAGGCCAAGACTGGCGAGAAAGGATTCAAGACTAGAAAACCTATCTCTGATCTTTGCAAGTTGATTTTGAATGAACCAGTCCCCTCTGTCTCGGAGGCTCTTGATAACTATTTTGCTGATGGAAAGGAATTAAACCGCTCTGAGATATATGATGCTTTGAGGCACCTCCGCAGGCTCAAGCTCTTTGGGAAGGCCTTGCAGCTATCAGAGTGGCTGGATGCAAATAACGAGTTCGAATTTGTTGAGCGAGATTATGCATCTAGGGTTGATCTGATTGCCAAAGTGCGTGGTCTTCAGAAGGCAGAGAACTATGCTGATCACGTCCCAAGAGCCTACAGACAAGAGCTGGTCTACAGAACATTGCTAGCCAACTGTGTGACCACCGTCAATGTGAAAAAAGCTGAAGAGGTCTTTAATAAAATGAAGGACCTAGGGTTTCCAATGACAACCTTTGTGTGTAATCAATTGTTGCTTCTCTACAAGAGAACTGATAAGAAAAAAATCGCCGATGTACTTCTAATGATGGAGAAAGAAGATATCAAGCCCACTCTTTTTACTTACCAAGTCTTGATAGACACTAAAGGTCAAGCTAATGACACAGTGGGAATGGAACAAATTGTTGAGACTATGAAGGCTGAAGGTGTTGAACCTAATAGTGGCGTGCAAGCCACTTTGGCAAAGCATTATGCCTATTGTGGACTCAAAAAAAAAGCTGAGGATGTTCTGAAGGAGATGGAAGGTAGCGACTTGAAGAAAAACCGTTGGTTGTGTTCCATTTTGCTTCCTATCTATGCCGATCTTGGCTATGCTGATGAAGTTGAAAGAATTTGGGAAGTTTGTGAGTCCAAGCCCAGACAACGTGATTACCTAGCTGCCATGGGAGCCTGGGGAAAGCTGAAGAATGTTGAGAAGGCTGAAGCTGTCTTTGATAAGTTGAAAAATTCCATGAAGAAGCTCACTTCAGTTCATTATTCTACTATGTTGAGAGTTTATGCAGACAATAAAATGTTGAACAAAGGAAAGGAGCTACTGAAGAAAATGGGTGACAGTCATTGCCACATTGGACCTATTACTTGGGACTCGCTTGTGAAACTGTATGTGGATGCAGGAGAAGTGGAGAAAGCCGACTCTGTGTTGCAGAAAGCCTCACAGCAGAATCAGCTGAGGCCATTGTTCAGCTCGTATATGGTACTCTTAGACAAATACGCTAAACGAGGTGACGTCCATAATGCTGAGAAGATATTTTATAGGATGAGACAGGCAGGCTATATCGCCCGCGTAAGGCCATTCCATGCACTCCTGCAAGCATACACAAACGCCAATACTCCAGCTTATGGGATCAGAGAGAGAATGAAGGCTGATAATTTATTCCCGAATAAGGCACTTGCTGCACAGATTTCCATGGTTGATGCATTTAGGAAGACTAGTGTGTCAGAATTGCTTGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56507.p1 GENE.R_Transcript_56507~~R_Transcript_56507.p1 ORF type:complete len:635 (+),score=138.78,PPR|PF01535.16|0.15,PPR|PF01535.16|56,PPR|PF01535.16|3.6,PPR|PF01535.16|9.2e+02,PPR|PF01535.16|2.8,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.2,PPR|PF01535.16|0.00024,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|9.1e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|18,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|1.2e+04,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|74,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.17,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|34,PPR_2|PF13041.2|0.028,PPR_2|PF13041.2|1.1e+03,PPR_1|PF12854.3|9.8,PPR_1|PF12854.3|20,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|3.1e+02,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.76 R_Transcript_56507:207-2111(+)
MWALSRASTNSVRVQGLKMATFRACAGVGTLGSGIEEKSSSFNGQTTNRWITSKTCYCASKPCCCAVKVANPFFIGTRGLSSQAGAKSGGEEEDSLEEGFSELEMPEASETTNVDIVDEDTTSDSESDVSSDEENHEEGLESELMADTEADSEAKTGEKGFKTRKPISDLCKLILNEPVPSVSEALDNYFADGKELNRSEIYDALRHLRRLKLFGKALQLSEWLDANNEFEFVERDYASRVDLIAKVRGLQKAENYADHVPRAYRQELVYRTLLANCVTTVNVKKAEEVFNKMKDLGFPMTTFVCNQLLLLYKRTDKKKIADVLLMMEKEDIKPTLFTYQVLIDTKGQANDTVGMEQIVETMKAEGVEPNSGVQATLAKHYAYCGLKKKAEDVLKEMEGSDLKKNRWLCSILLPIYADLGYADEVERIWEVCESKPRQRDYLAAMGAWGKLKNVEKAEAVFDKLKNSMKKLTSVHYSTMLRVYADNKMLNKGKELLKKMGDSHCHIGPITWDSLVKLYVDAGEVEKADSVLQKASQQNQLRPLFSSYMVLLDKYAKRGDVHNAEKIFYRMRQAGYIARVRPFHALLQAYTNANTPAYGIRERMKADNLFPNKALAAQISMVDAFRKTSVSELLD*

Click here to download the sequence:
Link to NCBI Protein BLAST