Transcript Information: R_Transcript_5663.p1


Annotated TAIR IDAT1G67680.1
Annotated Gene NameSRP72 RNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25365962-25368464 | Reverse length=664
E-Value6.3E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.291353041604
Replicate 230.348912559881
Replicate 338.075175197192
Condition 2: 8 Hour
Replicate 134.95366371393
Replicate 238.972777618569
Replicate 347.67171877432
Condition 3: 24 Hour
Replicate 146.842162729172
Replicate 241.736857631496
Replicate 347.930474389095


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5663.p1 GENE.R_Transcript_5663~~R_Transcript_5663.p1 ORF type:complete len:669 (+),score=190.28,SRP72|PF08492.8|2.4e-16,SRP72|PF08492.8|4.3e+03,SRP_TPR_like|PF17004.1|4e-15,SRP_TPR_like|PF17004.1|4.2e+03,SRP_TPR_like|PF17004.1|3.5e+03,TPR_16|PF13432.2|1.9,TPR_16|PF13432.2|0.53,TPR_16|PF13432.2|7.7,TPR_16|PF13432.2|80,TPR_16|PF13432.2|1.5,TPR_16|PF13432.2|0.085,TPR_16|PF13432.2|4.2e+03,TPR_16|PF13432.2|2.3,TPR_19|PF14559.2|0.0032,TPR_19|PF14559.2|0.75,TPR_19|PF14559.2|46,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|54,TPR_19|PF14559.2|0.33,TPR_19|PF14559.2|0.83,TPR_19|PF14559.2|1.5e+02,ANAPC3|PF12895.3|6.8e-05,ANAPC3|PF12895.3|0.47,ANAPC3|PF12895.3|4.3e+02,ANAPC3|PF12895.3|2.2e+03,ANAPC3|PF12895.3|1.6e+02,ANAPC3|PF12895.3|3.2e+02,ANAPC3|PF12895.3|4.2e+02,TPR_12|PF13424.2|2.7e+03,TPR_12|PF13424.2|57,TPR_12|PF13424.2|3.1e+02,TPR_12|PF13424.2|6.8,TPR_12|PF13424.2|2.6,TPR_12|PF13424.2|0.007,TPR_2|PF07719.13|26,TPR_2|PF07719.13|6.1e+03,TPR_2|PF07719.13|0.1,TPR_2|PF07719.13|27,TPR_2|PF07719.13|69,TPR_2|PF07719.13|37,TPR_2|PF07719.13|20,TPR_2|PF07719.13|5.4e+03,TPR_2|PF07719.13|6.4e+03,TPR_2|PF07719.13|4.5e+03,TPR_2|PF07719.13|2.2e+02,TPR_14|PF13428.2|5.2,TPR_14|PF13428.2|4.7e+03,TPR_14|PF13428.2|3.5e+02,TPR_14|PF13428.2|1.6e+02,TPR_14|PF13428.2|2.8e+03,TPR_14|PF13428.2|2.2e+02,TPR_14|PF13428.2|57,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|4.6e+03,TPR_14|PF13428.2|35,TPR_14|PF13428.2|98,TPR_6|PF13174.2|5e+02,TPR_6|PF13174.2|8.1,TPR_6|PF13174.2|1.7e+02,TPR_6|PF13174.2|1.2e+04,TPR_6|PF13174.2|10,TPR_6|PF13174.2|92,TPR_6|PF13174.2|13,TPR_6|PF13174.2|1.5e+04,TPR_6|PF13174.2|15 R_Transcript_5663:239-2245(+)
ATGGCGCCTAAAGCGAAGGGGAAACCTGCTCAATCGCAACCAGCAATGTCAATCGAAGATCTGTTCACTTCCCTCGATCGACATATCAAAGAAACTCAATACCAAAGGGCCGTCAAAGTTGCTGATCAAATTTTGGCAATTGCACCTGGTGATGAGGATGCACTTCGGTGCAAGATTGTTGCTCTGATTAAAGCTGATAATATTGATGAAGCTTTCAAGACTATCCAATCTTCTCATAAGCTCCCCATTGATCTCAATTATTACAAGGCATATTGTTTATACAGGCAAAACAAATTGGATGAAGCTTTGGAATCTTTGAAAAGCCAAGAAAGGAGCGATCTGACTATGCTGCTGGAATCCCAGATTTTGTATCGTTTGGGAAAATTTGATGCTTGTTTGAAAATTTATCAATCGCTTCAGAGTGACAAAATTGAATCCTTGGAGGTCAACTTTGTTGCTGCTTTGGTAGCTGCTGGGCGATCATCTGAGGTGCAAAAAACATTGGATGCACTCAAAGTTAAACCAACAAGCCAGTATGAGTTAGCTTACAACACTGCTTGCTCATTGATTGAGAGGCAAAGTTATGCTGAAGCAGAGCAGCTCTTGCTGGCTGCTCGAAGAGTGGGCCAGGAAGCTTTTATGGAAGATAACTGGGCAGATGACGAGATAGAGAGTGAATTGATTCCTATCACTGTCCAACTGGCATATGTTCAACAGCTTCTTGGAAACAAACAAGAAGCATTAGAAATATACATAGACATTATCAGAAAGAATTTTGATGATGACTCGACACTTGCGGTGGCAACAAACAATTTAATTACTCTTAGAGGTCCAAAAGATGTTTCTGACAGCCTAAAGAAGCTTGATCGGCTTATGGAGAAAGGTGATGGAGGTCGCTTCCAACTGGTTCGTGGGTTGGACTTGAAGCTTTTTGCCAATCAGAAGGAGGCAATCTACACTAACCGAGCACTTCTACTCCTCCATGCTAACAGGATGGATCAGGCTCGTGAACTTGTTACTGCTCTACTTGGCATGTTTCCAGACAGTGTGATGCCTGTACTGCTTCAAGCTGCTGTATATGTGAGAGAGAACAAGGCAGGAAAAGCTGAAGAAGTGCTAGGGCAGTTTGCTGAAAGGTTCCCAGATAAGTCTAAGCTATTTCTCCTCGTGAGGGCCCAAGTGGCTGCTGCAGCTGGGCACTCTCAAGTTGCTGCGGAGTCTCTCGCCAAGATCCCTGATATTCAACACATGCCTGCGACTGTGGCCACCATTGTAGCACTTAAAGAACGTGCTGGAGATATTGATGGTGCGGAAGTTGTATTTGACTCTGCAATCAAGTGGTGGTCAAATGCCATGACAGAGGACAACAAACTAACTGTGATTATGCAGGAGGCTGCTTCCTTCAAGCTCAAGCATGGTCGAGAGCGGGAGGCTTTACAGTTATTTGAGGAACTTGTTAGGAACCACAAAAGCATTGATGCATTGGCAGGACTAGTAATTACTGCTGCTCGTGTAGACGTTGAAAAAGCTGAAGCTTACGAAAAGCAACTTAAGCCACTTCCTGGTCTGAAGGCGGTTGATATTGATGCTCTCGAAAAGACTTCTGGTGCAAAGCTCACTGAAAACAGTTCCCGTGTGGTAACCATAGAAGGGAACGAGGACAATAAAAACAAGGATAAAACTAAGAAGAAAAGGAAGAGAAAGCCAAGGTATCCCAAGGGATTTGACCCAGCTAATCCCGGCCCCCCACCAGATCCTGAACGCTGGCTGCCAAAGAGGGAGAGGTCTTCTTACAGGCCCAAGAGAAAGGGTAAGAGGGCAGCTCATGTGAGAGGTTCTCAGGGTGCTGTTGTTCGGGAGAAACAGGAAGTTGGAGCTTCTGATGCTTCCCGGGGTTCTGGTGCAAGCAATGCTGATGGTAATCCCACCAATTCGAAATCAAGCCAGGCCAGCACTTCAAAAGGAGCCTCACAGTCATCCAAGTCAAAGAAAAAGTCTAGAAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5663.p1 GENE.R_Transcript_5663~~R_Transcript_5663.p1 ORF type:complete len:669 (+),score=190.28,SRP72|PF08492.8|2.4e-16,SRP72|PF08492.8|4.3e+03,SRP_TPR_like|PF17004.1|4e-15,SRP_TPR_like|PF17004.1|4.2e+03,SRP_TPR_like|PF17004.1|3.5e+03,TPR_16|PF13432.2|1.9,TPR_16|PF13432.2|0.53,TPR_16|PF13432.2|7.7,TPR_16|PF13432.2|80,TPR_16|PF13432.2|1.5,TPR_16|PF13432.2|0.085,TPR_16|PF13432.2|4.2e+03,TPR_16|PF13432.2|2.3,TPR_19|PF14559.2|0.0032,TPR_19|PF14559.2|0.75,TPR_19|PF14559.2|46,TPR_19|PF14559.2|3.6e+02,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|54,TPR_19|PF14559.2|0.33,TPR_19|PF14559.2|0.83,TPR_19|PF14559.2|1.5e+02,ANAPC3|PF12895.3|6.8e-05,ANAPC3|PF12895.3|0.47,ANAPC3|PF12895.3|4.3e+02,ANAPC3|PF12895.3|2.2e+03,ANAPC3|PF12895.3|1.6e+02,ANAPC3|PF12895.3|3.2e+02,ANAPC3|PF12895.3|4.2e+02,TPR_12|PF13424.2|2.7e+03,TPR_12|PF13424.2|57,TPR_12|PF13424.2|3.1e+02,TPR_12|PF13424.2|6.8,TPR_12|PF13424.2|2.6,TPR_12|PF13424.2|0.007,TPR_2|PF07719.13|26,TPR_2|PF07719.13|6.1e+03,TPR_2|PF07719.13|0.1,TPR_2|PF07719.13|27,TPR_2|PF07719.13|69,TPR_2|PF07719.13|37,TPR_2|PF07719.13|20,TPR_2|PF07719.13|5.4e+03,TPR_2|PF07719.13|6.4e+03,TPR_2|PF07719.13|4.5e+03,TPR_2|PF07719.13|2.2e+02,TPR_14|PF13428.2|5.2,TPR_14|PF13428.2|4.7e+03,TPR_14|PF13428.2|3.5e+02,TPR_14|PF13428.2|1.6e+02,TPR_14|PF13428.2|2.8e+03,TPR_14|PF13428.2|2.2e+02,TPR_14|PF13428.2|57,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|4.6e+03,TPR_14|PF13428.2|35,TPR_14|PF13428.2|98,TPR_6|PF13174.2|5e+02,TPR_6|PF13174.2|8.1,TPR_6|PF13174.2|1.7e+02,TPR_6|PF13174.2|1.2e+04,TPR_6|PF13174.2|10,TPR_6|PF13174.2|92,TPR_6|PF13174.2|13,TPR_6|PF13174.2|1.5e+04,TPR_6|PF13174.2|15 R_Transcript_5663:239-2245(+)
MAPKAKGKPAQSQPAMSIEDLFTSLDRHIKETQYQRAVKVADQILAIAPGDEDALRCKIVALIKADNIDEAFKTIQSSHKLPIDLNYYKAYCLYRQNKLDEALESLKSQERSDLTMLLESQILYRLGKFDACLKIYQSLQSDKIESLEVNFVAALVAAGRSSEVQKTLDALKVKPTSQYELAYNTACSLIERQSYAEAEQLLLAARRVGQEAFMEDNWADDEIESELIPITVQLAYVQQLLGNKQEALEIYIDIIRKNFDDDSTLAVATNNLITLRGPKDVSDSLKKLDRLMEKGDGGRFQLVRGLDLKLFANQKEAIYTNRALLLLHANRMDQARELVTALLGMFPDSVMPVLLQAAVYVRENKAGKAEEVLGQFAERFPDKSKLFLLVRAQVAAAAGHSQVAAESLAKIPDIQHMPATVATIVALKERAGDIDGAEVVFDSAIKWWSNAMTEDNKLTVIMQEAASFKLKHGREREALQLFEELVRNHKSIDALAGLVITAARVDVEKAEAYEKQLKPLPGLKAVDIDALEKTSGAKLTENSSRVVTIEGNEDNKNKDKTKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKGKRAAHVRGSQGAVVREKQEVGASDASRGSGASNADGNPTNSKSSQASTSKGASQSSKSKKKSRK*

Click here to download the sequence:
Link to NCBI Protein BLAST