Transcript Information: R_Transcript_56765.p1


Annotated TAIR IDAT1G14790.1
Annotated Gene NameRNA-dependent RNA polymerase 1
Annotated Gene Symbol(s)RDR1, ATRDRP1
Annotation TypeOrtholog
Chromosome Positionchr1:5094317-5097817 | Reverse length=1107
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.057046856175
Replicate 213.724773877084
Replicate 317.4894666146
Condition 2: 8 Hour
Replicate 115.810624930506
Replicate 216.716195105368
Replicate 321.190277057281
Condition 3: 24 Hour
Replicate 120.293969542293
Replicate 214.202102049114
Replicate 318.591947559552


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56765.p1 GENE.R_Transcript_56765~~R_Transcript_56765.p1 ORF type:complete len:1129 (+),score=208.00,RdRP|PF05183.8|9e-188,RRM_6|PF14259.2|0.00031,RRM_6|PF14259.2|4.1e+02,RRM_6|PF14259.2|7.4e+02 R_Transcript_56765:149-3535(+)
ATGGGCAAGACAATTCAAGTCTCGGGTTTTCCTTCTACTGTTTCTGCAGAAGCAGTCAAAACATACTTGGAGCAGTATACAGGTGAAAAATCTGTTTATGCTCTGAAAATAAGGCAGTTTAAAACTGGAGGGAAAAGATCATATGCTATTGTGCAATTCTCGAGTGCTGGAGAGGCAGAACTTATTTTGTCCTTAGGCTTACCGCCTAAGAAACTATGGTATGGCTCTAGCTATTTGCAGGTTCGAGTGATGGAAAGAGATATCGTGCCCAAGCCAAGAAAGTATCAGCATAGAATGACAAATGTGACGCTTCATTTTGGATGTCAGATCTCAAATGACAAGTACCTCTGGTTCTCGAAGGGACAGGATGTTTCTCTATTATTTGGCTATGGGATGAGGAAACTTTACTTCTTCTTGCGTCATATTCGCAAAGAATATAAACTTGAGCTTTCTTATGAGAGTATTTGGCAAATTGAGCTACGGCGTCCACACAGTAGTCGACTGAAATATCTTCTAATTCAGCTATTTAGGGTTCCTCAAGTTTATGAGAAAGTCGAGCGTTCCTTTGGACAACTCTTCGAAAATAATTTTTTCAGAGACGAGCAAGATGATCAATGGATCAGAACAACAGACTTCACCATAAGTTGTATTGGAGAGTCATCAGTTTTGTGTTTAGAGCTTCCATCTGACTGTCAACTTCCCAATTTTAAAGAATATTTTGTCTACTATAAGGAGGAGAATGGGCAGTTCATTGTTGAGCGTGGTTCTACCTTCTCCAACAACTTGAAACTTGTTCCAATAGTGGCACCTCCTAGAGGATCCAGCTTACCCTTTGACATCTTGTTTAAGGTTAATTTGTTGGTTCAAAATGGATGTCTAGCTGGGCCAAATTTAGATGATACTTTCTTCCGGTTGGTTGATCCTGTTAGAATTAGTAAGCCCTGCATTGAATATGCACTTGAGCGACTTTTCCAAGTAAAGGAGTGCTGCTACAATCCAGTAGGATGGCTAAGTGAGCAATACCAAAAATACCTTAAATCTATGAGGCGTCCTGAGAAGCCGGCTATCTCCTTAGATGAGGGGTTGGTATATGTACGCAGGGTTCAAGTAACTCCGTGTAAGGTGTATTTTTGCGGCCCAGAAGCTAATGTTTCCAACCGAGTACTTCGACATTATCCTGATGACATTGATAATTTCCTTAGAATTTCTTTTTTGGATGAGGATTTGGAGAAACTGCATTCAGCAGATTTATCTGCACGCCTAGCATCTGAATCAGCTGCTTCTGACAGACGAACTGAAATTGACAAAAGGATCCGTTTCACTCTCAGAAATGGAATACTAATTGGTGATAAGAGGTTTGAGTTTCTGGCCTTCTCATCCAGCCAAGTACGGGATAATTCTGCCTGGATGTTTGCTTCAAGTCCTGGACTGTCTGCTGCAGATATAAGAAGTTGGATGGGTGATTTTAGTGGAATTAGAAATGTAGCAAAATATGCTGCCAGACTTGGTCAATCTTTCAGCTCATCCACTGAAACTCTCACTGTTGCCAAGCATGAAGTTGAGATGATACCTGATGTGGAAAGAAACGACTATGTTTTCTCTGATGGAATTGGAAAAATATCAGCTGATTTTGCTCACAAAGTTGCGATAAAATGTGGTTTCAAAAGCTCTTCACCTTCTTGCTTCCAAATTAGATATGGTGGATTTAAGGGTGTTGTGGCTGTTGATCCCTCATCATCTAAGAAACTGTCATTGCGAAAGAGCATGTGCAAGTACAAATCAGAGAATGAGAAACTAGATGTGTTAGCATATAGTAAATACCAACCTTGTTACCTGAATCGTCAGGTGATAACACTTCTGTCCACTCTTGGTGTAAAAGATCGAGTATTTGAAAAGAAACAGAGAGAAGCTCTGAATCAACTGGATGCAATCCTTACAGATCCGCTGAAGGCACAAGAGGCGTTAGAGCTTATGTGTCCTGGGGAGATCACTAACATTCTCAAGGAAATGCTCAAATGCGGCTACAAGCCTGACACTGAACCATTCCTTTCAATGATGTTGCAAGCTTTTCGTTCTTCAAAGTTACAAGAATTGAGGACTAAATCAAGAATATTTGTCCCAAGAGGTAGAGCAATGATGGGATGTCTTGATGAAACTAAAGCCTTGGAATATGGTCAGGTCTTTGTTCAAGTATCTGGAGCAAGATTTAGGAATGTTGGTAATGAAGTCCTTACACATGTTGGCGCTGAATATGAACCATGTAATTATGTTGTGAATGGAAAAGTAGTTGTTGCCAAGAACCCTTGTCTGCATCCTGGTGATGTGCGTGTCCTTATGGCCGTAGATGTGCCTTCTTTGCACCACATGGTTGACTGTGTTGTCTTTCCTCAGAAAGGGAACAGGCCTCATCCGAATGAATGCTCGGGTAGTGACCTTGATGGTGACATCTACTTTGTTTGTTGGGACTCAGACCTGATACCACCTCGTCAAGTTGCGCCTATGGATTACTCTCCAGCAAAATGTGAGGAATTGGATCACGATGTTACAATCGAGGAAGTGATGGAGTACTTTGCCAATTATATCATAAATGATAGCTTAGGAATCATTGCAAATGCACATACTGCCTTTGCTGATAAGGAACCTGGAAAAGCAATGAGTAGCTCTTGTATAGAGCTTGCCAAACTTTTCTCGATCGCTGTTGACTTCCCCAAAACTGGTGTGCCAGCAGTCATACCTCGAAACCTCTATGTCAAAGAGTACCCTGATTTCATGGAGAAGCCTGACAAACCGACCTATGAATCTGTTAATGTTATAGGCAAGCTCTTCCGAGAAGTCAAAGAAAGGTCCCCTCAGGCACCCTCTATAAGAAGATTCACCCTTGAAATAGCTATGCGGTCTTATGACCGAGATATGGAATATGACGGATTTGAGGATCATCTTGCTGACGCTCACTACTACAAAAGCCAGTATGACTTCAAGCTCGGGAACTTGATGGAATACTATGGGATTAAAACTGAGGCCGAAATTCTGAGTGGGAATATAATGCGAATGTCCAATTCCTTCGATAGGAGGAAGGATGTGGAGGCTATTACTATGGCCGTGAGGTCCTTGAGGAAGGAAGCTAGGACTTGGTTCAATGAAAAGGGAACTGATTCGAGCTCAGGAGCTGACAATATGTATGCCAAGGCTTCAGCTTGGTATCATGTAACTTACCACCCGAGTTATTGGGGTTCGTACAATGAGGGTATGAACCGTGATCATTTCCTTAGCTTTCCATGGTGTGTGTATGACAGGCTAATCACCATCAAGAAGAACAGAATGACTGCCAGTTCCGCAGGGTTATCGTCACTGGCCCATCGATTTGGCAAGGGATTCAGTATGAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56765.p1 GENE.R_Transcript_56765~~R_Transcript_56765.p1 ORF type:complete len:1129 (+),score=208.00,RdRP|PF05183.8|9e-188,RRM_6|PF14259.2|0.00031,RRM_6|PF14259.2|4.1e+02,RRM_6|PF14259.2|7.4e+02 R_Transcript_56765:149-3535(+)
MGKTIQVSGFPSTVSAEAVKTYLEQYTGEKSVYALKIRQFKTGGKRSYAIVQFSSAGEAELILSLGLPPKKLWYGSSYLQVRVMERDIVPKPRKYQHRMTNVTLHFGCQISNDKYLWFSKGQDVSLLFGYGMRKLYFFLRHIRKEYKLELSYESIWQIELRRPHSSRLKYLLIQLFRVPQVYEKVERSFGQLFENNFFRDEQDDQWIRTTDFTISCIGESSVLCLELPSDCQLPNFKEYFVYYKEENGQFIVERGSTFSNNLKLVPIVAPPRGSSLPFDILFKVNLLVQNGCLAGPNLDDTFFRLVDPVRISKPCIEYALERLFQVKECCYNPVGWLSEQYQKYLKSMRRPEKPAISLDEGLVYVRRVQVTPCKVYFCGPEANVSNRVLRHYPDDIDNFLRISFLDEDLEKLHSADLSARLASESAASDRRTEIDKRIRFTLRNGILIGDKRFEFLAFSSSQVRDNSAWMFASSPGLSAADIRSWMGDFSGIRNVAKYAARLGQSFSSSTETLTVAKHEVEMIPDVERNDYVFSDGIGKISADFAHKVAIKCGFKSSSPSCFQIRYGGFKGVVAVDPSSSKKLSLRKSMCKYKSENEKLDVLAYSKYQPCYLNRQVITLLSTLGVKDRVFEKKQREALNQLDAILTDPLKAQEALELMCPGEITNILKEMLKCGYKPDTEPFLSMMLQAFRSSKLQELRTKSRIFVPRGRAMMGCLDETKALEYGQVFVQVSGARFRNVGNEVLTHVGAEYEPCNYVVNGKVVVAKNPCLHPGDVRVLMAVDVPSLHHMVDCVVFPQKGNRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVAPMDYSPAKCEELDHDVTIEEVMEYFANYIINDSLGIIANAHTAFADKEPGKAMSSSCIELAKLFSIAVDFPKTGVPAVIPRNLYVKEYPDFMEKPDKPTYESVNVIGKLFREVKERSPQAPSIRRFTLEIAMRSYDRDMEYDGFEDHLADAHYYKSQYDFKLGNLMEYYGIKTEAEILSGNIMRMSNSFDRRKDVEAITMAVRSLRKEARTWFNEKGTDSSSGADNMYAKASAWYHVTYHPSYWGSYNEGMNRDHFLSFPWCVYDRLITIKKNRMTASSAGLSSLAHRFGKGFSMK*

Click here to download the sequence:
Link to NCBI Protein BLAST