Transcript Information: R_Transcript_56828.p1


Annotated TAIR IDAT1G21065.1
Annotated Gene Nameunknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7374210-7375644 | Forward length=217
E-Value5.7E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10430263402696
Replicate 21.4397463142604
Replicate 30.9162695038461
Condition 2: 8 Hour
Replicate 10.55967691307989
Replicate 20.63888233831959
Replicate 30.20744697851871
Condition 3: 24 Hour
Replicate 10.39356240961778
Replicate 22.1425108636561
Replicate 30.62536299105421


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56828.p1 GENE.R_Transcript_56828~~R_Transcript_56828.p1 ORF type:complete len:175 (+),score=30.82,UPF0047|PF01894.13|9.9e-15 R_Transcript_56828:41-526(+)
ATGGAGGCCTCAGCTATTTTGGGGGCAAAGCCATTTGCACCGTTTTCTTCCATTCGAATAAGATCAGTTCATAGCAGCCCAGCAATCGACACCTTTTCTTCAAATTCAATGGCAGCGACTCCTTCTGCTCCCAAGTGGGCTCAGAAGACCATCACTCTCTCTCCTCATCGCCGTGGCTGCCACCTCATCACCTCTAAGGTACTGAAGGAGATCGGAGACGATTTATCTGAATTCAAATGTGGGCTTGCTCATCTTTTGTTACAACATACAAGTGCTTCTCTGACAATAAATGAGAATTATGATGCTGATGTTCGAGAGGACACTGAGACATTCCTCAACAGGGTAGTGCCAGAGGGAAGTTCTGCACCTTGGAAGCATACTCTAGAAGGTAAAATTATGCTGATTCTTGTGTATTTCTGCTTGGATCTTAGTAATTGTAACCTCAGATCCAGCTCAGAGTTTCCCTTGCGTTTGGTTTCTATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56828.p1 GENE.R_Transcript_56828~~R_Transcript_56828.p1 ORF type:complete len:175 (+),score=30.82,UPF0047|PF01894.13|9.9e-15 R_Transcript_56828:41-526(+)
MEASAILGAKPFAPFSSIRIRSVHSSPAIDTFSSNSMAATPSAPKWAQKTITLSPHRRGCHLITSKVLKEIGDDLSEFKCGLAHLLLQHTSASLTINENYDADVREDTETFLNRVVPEGSSAPWKHTLEGKIMLILVYFCLDLSNCNLRSSSEFPLRLVSI*

Click here to download the sequence:
Link to NCBI Protein BLAST