Transcript Information: R_Transcript_56838.p1


Annotated TAIR IDAT1G56690.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21253817-21255931 | Forward length=704
E-Value2.8E-290
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0395321146741
Replicate 20.45720587171168
Replicate 30.76739489434346
Condition 2: 8 Hour
Replicate 10.65623758652583
Replicate 20.67419744244781
Replicate 30.91214123720537
Condition 3: 24 Hour
Replicate 11.5382115395447
Replicate 21.3669088424646
Replicate 31.4298500549229


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56838.p1 GENE.R_Transcript_56838~~R_Transcript_56838.p1 ORF type:5prime_partial len:597 (+),score=136.68,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|6.7e-05,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|3.2e-07,PPR|PF01535.16|0.00081,PPR|PF01535.16|0.012,PPR|PF01535.16|0.9,PPR|PF01535.16|2.5e-09,PPR|PF01535.16|0.26,PPR|PF01535.16|0.18,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.3,PPR_2|PF13041.2|5.7e-06,PPR_2|PF13041.2|7.9e-05,PPR_2|PF13041.2|7.6e-09,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|0.0059,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|2.6e+02,PPR_2|PF13041.2|1.9e-11,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.6,PPR_2|PF13041.2|19,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|4.8e-06,PPR_1|PF12854.3|0.5,PPR_1|PF12854.3|0.00037,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|8.6e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.007,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|22,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|8e+02,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.28,DYW_deaminase|PF14432.2|1.1e-39 R_Transcript_56838:1-1791(+)
AATGTGGTTTCTTGGACATCAATGTTAAGAGGGTATGTGCAAGAGGGTATGATGTCGGAGGCGAGTTTGTTGTTTGATACGATGCCTGAGAAGAATGTGATTTCATGGACTGTGATGCTTGGTGGACTGATTCGAGTGGGCGAGATTGAGGAGGCAAGGAGGCTTTTTGATAGCATGCCCGTGAAAGACGTGGTTGCATGGACTACCATGATTGCTGGTTATTGTCAAGCAGGAAGGTTGGCTTTAGCGAGGGAGCTTTTCGATGAGATGCCCAAGAGGAATGTCATTTCTTGGACCACTATGATAAATGGTTATGCAGAAAATAATAAGGTGGATGTTGCTAGGAAGCTTTTTGAGGTGATGCCTGAGAGGAATGAGGTTTCTTGGACTGCAATGCTGATGGGTTATGCTCGATGTGGACGAATGCAAGAGGCCTCAGAGCTCTTTGATGCTATGCCTGTTAAGTCAGTTGGTACCTGTAATGGAATGATAATCGGGTATGGACAAAATAGGGATGTGGCCAAGGCAAGGAAAACGTTTGAGAATATGGAGAGAAGAGATGATTGGACATGGTGTGCAATGCTCAAGGTGTATGAAAGAAATGGTTTTGAGTTGGATGCTTTGCATATGTTTTCTGTAATGCAACATGAGGGATTTCGGCCAAATTTCCCTGCTTTGATTAGCATTCTCTCAGTTTGTGGGAGTCTGGCTAGTCTTTCTCATGGTAGACAGATTCATGCACAATTGATGAGGGGCAACTTTGATGGTGATGTCTTCATTTCCTCTGTTCTGCTCACCATGTATGTGAAATGTGGTGATCTGATAAAGGCGAAACTAGTGTTTGACAGGTTTGCAATGAAGGATGTTGTTATGTGGAATTCTATGATCACAGGCTATGCACAACATGGCTTAGCAGATGAAGCCTTGGATTACTTCTATCGAATGGTGTCAGCAGGCATTACTCCTGATGATGTTACATTTGTGGGTGTTCTTACAGCATGTAGCTACTCAGGGAGGGTGAAAGAAGGACGTCAGATCTTTGAATCGATGAAAACTAGGTATCAATTAGAACCAGGAGTTGAACACTGTGCTTGCATGGTTGATCTTCTTGGTAGAGCCGGCCTCTTCAGTGAAGCCATGGATTTGATACATAACATGCATATAAAAGCAGATGCCGTCGTCTGGGGTGCATTGTTAGGTGGCTGCAAAATCCATATGAACATTGATCTGGCTGAAGTGGCAGCAAAGAAACTTGTAGAGCTTGAACCAAAAAATTCTGGTCATTACACCTTGCTCTCTAACATTTATGCATCAAAAGGTAGATGGAATGATGTTACCGAGGTAAGGAAGAAAATGAAAGCCAGAAAAGTGAAAAAATCTCCAGGTTGTAGCTGGATTGAGGTTGACAAGGAAGTGCATATGTTTACTGGTGGGGATAGTGAGGCTCATCCTGATTATGCATTGATATTAAAAATGTTAGAAAGCTTAATTGGAAGGTTAAGAGAAGTTGGGTATCATCCGGATGCTAGCTTTTCCCTGCATGACTTGGACGATGAAGACAAGGCAACCTCTGTGAGCTTTCATAGTGAGAAACTTGCTGTGGCATATGGACTTTTGAAGGTGCCTCCTGGAATGCCCATCCGTGTCATGAAAAACCTAAGGGTATGTGGTGATTGCCATACTGCAATCAAACTAATATCGAAAGTCACTGGTCAGGAGATCATATTAAGAGATGCCAATAGATTTCATCATTTTAAAGATGGCTTGTGCTCTTGTAAAGACTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56838.p1 GENE.R_Transcript_56838~~R_Transcript_56838.p1 ORF type:5prime_partial len:597 (+),score=136.68,PPR|PF01535.16|4.4e-07,PPR|PF01535.16|6.7e-05,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|3.2e-07,PPR|PF01535.16|0.00081,PPR|PF01535.16|0.012,PPR|PF01535.16|0.9,PPR|PF01535.16|2.5e-09,PPR|PF01535.16|0.26,PPR|PF01535.16|0.18,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.3,PPR_2|PF13041.2|5.7e-06,PPR_2|PF13041.2|7.9e-05,PPR_2|PF13041.2|7.6e-09,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|0.0059,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|2.6e+02,PPR_2|PF13041.2|1.9e-11,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.6,PPR_2|PF13041.2|19,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|4.8e-06,PPR_1|PF12854.3|0.5,PPR_1|PF12854.3|0.00037,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|10,PPR_1|PF12854.3|8.6e+02,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.007,PPR_3|PF13812.2|0.09,PPR_3|PF13812.2|22,PPR_3|PF13812.2|3.8e+02,PPR_3|PF13812.2|8e+02,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.28,DYW_deaminase|PF14432.2|1.1e-39 R_Transcript_56838:1-1791(+)
NVVSWTSMLRGYVQEGMMSEASLLFDTMPEKNVISWTVMLGGLIRVGEIEEARRLFDSMPVKDVVAWTTMIAGYCQAGRLALARELFDEMPKRNVISWTTMINGYAENNKVDVARKLFEVMPERNEVSWTAMLMGYARCGRMQEASELFDAMPVKSVGTCNGMIIGYGQNRDVAKARKTFENMERRDDWTWCAMLKVYERNGFELDALHMFSVMQHEGFRPNFPALISILSVCGSLASLSHGRQIHAQLMRGNFDGDVFISSVLLTMYVKCGDLIKAKLVFDRFAMKDVVMWNSMITGYAQHGLADEALDYFYRMVSAGITPDDVTFVGVLTACSYSGRVKEGRQIFESMKTRYQLEPGVEHCACMVDLLGRAGLFSEAMDLIHNMHIKADAVVWGALLGGCKIHMNIDLAEVAAKKLVELEPKNSGHYTLLSNIYASKGRWNDVTEVRKKMKARKVKKSPGCSWIEVDKEVHMFTGGDSEAHPDYALILKMLESLIGRLREVGYHPDASFSLHDLDDEDKATSVSFHSEKLAVAYGLLKVPPGMPIRVMKNLRVCGDCHTAIKLISKVTGQEIILRDANRFHHFKDGLCSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST