Transcript Information: R_Transcript_56845.p1


Annotated TAIR IDAT4G32430.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15652982-15655273 | Forward length=763
E-Value1.1E-256
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98369250654173
Replicate 20.56576857409186
Replicate 31.028745700426
Condition 2: 8 Hour
Replicate 10.98969813409524
Replicate 20.90380809837127
Replicate 31.9564610249519
Condition 3: 24 Hour
Replicate 10.92793532207786
Replicate 20.66033709253225
Replicate 30.91744869945079


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_56845.p1 GENE.R_Transcript_56845~~R_Transcript_56845.p1 ORF type:complete len:668 (+),score=123.67,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|0.036,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|28,PPR_2|PF13041.2|3e-06,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|4.4e-05,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|39,PPR|PF01535.16|0.15,PPR|PF01535.16|4e+03,PPR|PF01535.16|0.00089,PPR|PF01535.16|0.18,PPR|PF01535.16|1e+04,PPR|PF01535.16|5.1,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|4.1,PPR|PF01535.16|5,PPR|PF01535.16|0.029,PPR|PF01535.16|1.8,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.23,PPR|PF01535.16|1e+04,PPR|PF01535.16|1.3e+02,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|11,PPR_1|PF12854.3|9.2e+02,PPR_1|PF12854.3|79,PPR_1|PF12854.3|65,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|3.7e+02,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.02,PPR_3|PF13812.2|79,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|0.00047,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|2.2e+03,PPR_3|PF13812.2|1.3e+02 R_Transcript_56845:857-2860(+)
ATGAGTATGTACTGTAAAGCAGGTCAATATGATCAGGCGATTCAGATTTTTAACACTATTGATGAGCCTGATACTGTCTCTTACAACACTATTCTTGTCGGTTTTCCCAATAATGATGATGCTTTGAGTTTTGCATCTAAAATGAATGCAAAAGGTGTTGTATTTGACCCTGTTAGTTATACTATTGCTCTGTCAAACTGTTTGAATGTGAAAGGTTTTTTGTTTGGGTTCCAACTACACTGTAACATTCTAAAATCAGGGTTGAATAGTGAGGTTTTTGTCGGGAATGCTCTTATTACCTTATACTCTAGGTGGGGTCGCATTAATGAGGCTGAGAGAGTGTTTGATTTAATGCCTACTAAGGATTCAGTGTCTTGGAATGCTATGTTATGTGGATATGGCCAAGAGGGAAGATTTGGACTTGAAACAATGTGTACCTTTCGTGAAATGATGAGAATAGGGATGAAAGCAGATCATGTCTCATTAACTGCTGCAATTTCCAGTTGTGGATATGAGAGAAATCTGAACATGGGGAGGTTGCTACATTGCTTGAGTTTAAAGGTTGGTTGTGAGAAACATGGCTCTGTTAGTAACGTTTTGATGTCAACATATGCAAAATGTGAGGTAATTGAAGACAGTAAGATGGTATTTCAAGGGATGGCTGAAAGAAATGTGGTTTCTTGGACATCAATGATGTCTATATTTCAAGAGGATGCGGTTTCTCTCTTCCATGAGATGAGGATGGATGGAGTCTATCCAAATGACGTAACCTTTATTGCGGTAATCCATGCTGCTACACTGGGGATTTTGATTACTGAAGGTCAAATGATCCATGGATTTGGCATAAAGACTGGTTTTGTGTTAGAGTTGAATGTCTCAAACAGTCTTGTCACCATGTATGCAAAATTTGAATCAATGGGAGATTCAGTGAAGGTTTTCGAGGAGCTTCACTGTAGGGATATTGTATCTTGGAATACTTTGATTTCTGGATATGATCAGAACAAGCTCTTTATAGAAGCTCTGGAGGCATTTCACTTAGCACTCTCGGAGATCCAGCCAAATGAATACACATTTGGTAGTGTTTTGAGTGCAATTGGATCTGCTGAAGCCATTTCACTAAGGCATGGGCAGAGATGCCACTCTCACCTGCTGAAACTTGGATTAAATTCCAATCTAATTGTCTCTGCCGCCCTCCTTGATATGTATGCTAAGCGTGGAAGCCTCTACGAATCCAAGAGCATTTTCAATGAAATCAATCAGAGAAATCAATTTGCATGGACGGCAATAATTTCTGCCCACGCAAGACATGGGGACTATAACTCTGTTATGGAAATATTTAGAGAGATGGGTAAGGTAGGTGTAAATCCTGATTCTATCACATTCCTTTCCATGCTAACTGCATGTGGCAGGAAGGGCATGGTTGATGAAGGCTGTCAGATTTGGGACATGATGATCAAAGACAATCTAATTGAGCCTTCACCTGAGCACTATGCTTGTATGGTGGATATGTTGGGTCGTGCAGGGCGATTGAAAGAGGCAGAGGAGTTAGTCCTTCAGATTCCTGGAGGACCATCATTTTCTGCTTTACAGAGCTTGTTAGGAGCGTGCAGATTGCATGGGGATATGGAGTTGGGTCAGAGAGTTGCCCACACACTGATAAAAATGGAGCCTCATGAATCAGGTTCTTATGTTTTGATGTCAAATTTGTTTGCCCAAAAAGGGGACTGGGAAACTGTCTCCATAACAAGGAGAAGAATGAGAGATAGAAGAGTCATAAAAGAAATTGGATTCAGCTGGGCTGATGTGGGTGGCGCTGATGGTTCTTTGACTATGTACGGGTTTTCTTCAGATGATACATCTCATCCAAGGTCTGTGGAGATATACCAAATGGCAGGGTGCTTAGCATTGGAAATGAAAAGCCTGGAGAGGGAGAGAGAAAAGTCAAGGCTAATTGATGTAAATAAGCTGTCCACACTTGCAAACTCCATCATTGCCGTGGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_56845.p1 GENE.R_Transcript_56845~~R_Transcript_56845.p1 ORF type:complete len:668 (+),score=123.67,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|0.036,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|28,PPR_2|PF13041.2|3e-06,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|4.4e-05,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|39,PPR|PF01535.16|0.15,PPR|PF01535.16|4e+03,PPR|PF01535.16|0.00089,PPR|PF01535.16|0.18,PPR|PF01535.16|1e+04,PPR|PF01535.16|5.1,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|4.1,PPR|PF01535.16|5,PPR|PF01535.16|0.029,PPR|PF01535.16|1.8,PPR|PF01535.16|1.5e-05,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.23,PPR|PF01535.16|1e+04,PPR|PF01535.16|1.3e+02,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|11,PPR_1|PF12854.3|9.2e+02,PPR_1|PF12854.3|79,PPR_1|PF12854.3|65,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|3.7e+02,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.02,PPR_3|PF13812.2|79,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|8.2e+03,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|0.00047,PPR_3|PF13812.2|0.06,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|2.2e+03,PPR_3|PF13812.2|1.3e+02 R_Transcript_56845:857-2860(+)
MSMYCKAGQYDQAIQIFNTIDEPDTVSYNTILVGFPNNDDALSFASKMNAKGVVFDPVSYTIALSNCLNVKGFLFGFQLHCNILKSGLNSEVFVGNALITLYSRWGRINEAERVFDLMPTKDSVSWNAMLCGYGQEGRFGLETMCTFREMMRIGMKADHVSLTAAISSCGYERNLNMGRLLHCLSLKVGCEKHGSVSNVLMSTYAKCEVIEDSKMVFQGMAERNVVSWTSMMSIFQEDAVSLFHEMRMDGVYPNDVTFIAVIHAATLGILITEGQMIHGFGIKTGFVLELNVSNSLVTMYAKFESMGDSVKVFEELHCRDIVSWNTLISGYDQNKLFIEALEAFHLALSEIQPNEYTFGSVLSAIGSAEAISLRHGQRCHSHLLKLGLNSNLIVSAALLDMYAKRGSLYESKSIFNEINQRNQFAWTAIISAHARHGDYNSVMEIFREMGKVGVNPDSITFLSMLTACGRKGMVDEGCQIWDMMIKDNLIEPSPEHYACMVDMLGRAGRLKEAEELVLQIPGGPSFSALQSLLGACRLHGDMELGQRVAHTLIKMEPHESGSYVLMSNLFAQKGDWETVSITRRRMRDRRVIKEIGFSWADVGGADGSLTMYGFSSDDTSHPRSVEIYQMAGCLALEMKSLEREREKSRLIDVNKLSTLANSIIAVG*

Click here to download the sequence:
Link to NCBI Protein BLAST